Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D13
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 278 MFDDEKFKVKYTVDKRGRPINETSTENLRKYY 373
           ++D+   + +  VD+ G  INE    N R++Y
Sbjct: 468 LYDEGTVRRRVAVDRSGIDINEEIQRN-REFY 498


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 746 SDLDGFAEFIYSAWRXIHKXSI 811
           SDL    EFIY     +H+ S+
Sbjct: 79  SDLHALVEFIYHGEVNVHQRSL 100


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 272 QPMFDDEKFKVKYTVDKRGRPINETSTENLRKYY 373
           +P +D ++   K  V K+GR    TS +  RK++
Sbjct: 412 KPSYDAQEPAWKTHVWKKGRDKKSTSKKPRRKFH 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,769
Number of Sequences: 438
Number of extensions: 3423
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)