Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D12
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    27   4.9  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   8.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   8.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   8.6  

>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 223 HRVTHDESNVIMNSDDSGDCG*DAMMNHLFCTRQHFRLCSCFS 351
           +R+     NVI ++DD G+    + M+HL        +  C S
Sbjct: 193 YRIISPNGNVIQDNDDDGESAAGSRMSHLLTMMSAENVFVCVS 235


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 575 NFIPHIKLIQDCRYKSEFQQYVRADVPCG 489
           N + +++ ++D  Y  EF+ +V+    CG
Sbjct: 91  NMLKYLRQVRDALYSEEFRSHVQKITGCG 119


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 420 VKVQDSCMLLCNDAVLNFVFVFSTTWH 500
           +   D C +  + A L  + V+ST WH
Sbjct: 603 INTNDYCFVNLSPAQLELISVYSTQWH 629


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 569 IPHIKLIQDCRYKSEFQQYVRADV 498
           I  + LIQ C ++ EF+QY ++ V
Sbjct: 77  IEALTLIQSCAHRDEFKQYAQSCV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,452
Number of Sequences: 5004
Number of extensions: 50138
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)