Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D10
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    25   0.94 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.6  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 638 FCHSLINNSIIIRLP 682
           FCHS+I   +II+LP
Sbjct: 13  FCHSIIQIPVIIQLP 27


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -3

Query: 342 FLVVKLLFP*IQATRTSSHIQYITTHSTVMTFLYYYIYIRMEHTEG 205
           F  ++ + P + + + S  IQ +   +  + FL+  ++  ME+TEG
Sbjct: 273 FAALRKIIPTLPSDKLSK-IQTLKLATRYIDFLFQVLHCNMENTEG 317


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 441 IIR*DLFNKYSHSHQR 394
           I+  +L+ KYSH+H++
Sbjct: 61  ILEYELYIKYSHTHEK 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,348
Number of Sequences: 438
Number of extensions: 5101
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)