Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D09
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   3.6  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   6.3  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.3  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 769 LCPHHDRAQQTTAFPSDSCRNQPLSPPDLQVYRHEPTTQLEQLAAA 632
           L P+   A +T A  S S + +P+S PD+       + + E L AA
Sbjct: 252 LQPYSPPANETPASSSSSAKARPVSVPDMSSPVPASSVEYESLKAA 297


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 344 LFSNARLAYRSFSLFSFKLTKAETLLTFLKFVTSFAF*KC 225
           L  NA    R+  + S  LTK +  L  L+F+T F F  C
Sbjct: 147 LIRNANENMRARRVNSVMLTKPKQFLFLLEFITLFIFTYC 186


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -1

Query: 395 SKDRHNLLAKRGLWFICLFSNARLAYRSFSLFSFKLTKAETLLTFLKFVTSFAF*KCECN 216
           SK   NL+++R L ++ L   + +  ++   FS KL        FLKF+      K E N
Sbjct: 355 SKHSKNLVSERML-YLSLMYKSLVDLKTIDSFSLKLL-------FLKFMICSCMVKGESN 406

Query: 215 FFL 207
           FFL
Sbjct: 407 FFL 409


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 179  MPTIECWFKIKKNYIH 226
            +P +EC+FK KK+ +H
Sbjct: 2108 LPCVECFFKYKKDALH 2123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,319
Number of Sequences: 5004
Number of extensions: 70215
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)