Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D09
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF353303-1|AAK32717.1|  367|Caenorhabditis elegans GATA-like tra...    29   3.4  
AF100657-1|AAC68957.3|  367|Caenorhabditis elegans Erythroid-lik...    29   3.4  
AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical ...    29   4.5  
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>AF353303-1|AAK32717.1|  367|Caenorhabditis elegans GATA-like
           transcription factorELT-6 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 601 RLEEIHRRVHPRLQVVQVVLWAHVGTPEGPVEREAGFYKSLMGKPWFA 744
           RL   HR VH R   +Q      +   E P   +A  +  L+G P  A
Sbjct: 294 RLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMA 341


>AF100657-1|AAC68957.3|  367|Caenorhabditis elegans Erythroid-like
           transcription factorfamily protein 6 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 601 RLEEIHRRVHPRLQVVQVVLWAHVGTPEGPVEREAGFYKSLMGKPWFA 744
           RL   HR VH R   +Q      +   E P   +A  +  L+G P  A
Sbjct: 294 RLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMA 341


>AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical
           protein C53D5.4 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 694 PPDLQVYRHEPTTQLEQLAAAGVLVYESPLSADQNRHYYR*CSRKKSKFRTQHLRPPPHN 515
           PPDL  + H P T  +Q+A   + +  +    D N  Y+   S +KS  R +    P   
Sbjct: 163 PPDLYQHHHIPHTS-QQVAQENLAMLANVPKLDDNNAYFDTFSPEKSGKRAKKRAAPSSA 221

Query: 514 H 512
           H
Sbjct: 222 H 222


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical protein
            T05A7.11 protein.
          Length = 1200

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 594  KIVTIIANVRERKVNSAHSTFALLHTIIQSFYCRHVVIL 478
            K++  IA++   K+ ++ S     H  I SF C H++++
Sbjct: 901  KLLHFIADLSIEKMETSQSVLKYAHDFIPSFTCDHLILV 939


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,438,341
Number of Sequences: 27780
Number of extensions: 404817
Number of successful extensions: 936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)