Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D02
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    72   1e-13
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    52   1e-07
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    28   2.1  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   4.9  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    26   8.5  

>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
 Frame = +3

Query: 546 QXICKRIKGLPGDK--VRGNFPKRTQVVPRRHVWLXGDNSSNSADSRIYGPVPAGLIRSX 719
           Q +CKRI G+PGD   V      +   +P  HVWL GDN ++S DSR YGPVP GLI++ 
Sbjct: 76  QHVCKRIIGMPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAK 135

Query: 720 VVCRVXP 740
           V+ RV P
Sbjct: 136 VIARVWP 142



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 359 LQYACITHCTFEYIGDFVMCSGPSMEPTLES-NNILLTEHISPRL-QKLRRGDIIIAKSP 532
           +Q A   H   EY+    M SGPSM PTL S    +L + +  R  +    GD++++  P
Sbjct: 12  VQIAAFVHQIHEYLFQVQMTSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKP 71

Query: 533 S 535
           S
Sbjct: 72  S 72


>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +3

Query: 546 QXICKRIKGLPGDKVRGNFPKRTQVVP--RRHVWLXGDNSSNSADSRIYGPVPAGLIRSX 719
           + + KR+ G+  D ++   PK+  +VP    HVW+ GD   +S DS  +GPV  GLI + 
Sbjct: 88  ELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSIDSNKFGPVSTGLITAK 147

Query: 720 VVCRVXPF 743
           V+  + PF
Sbjct: 148 VIAILFPF 155


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 152 EXLKLLISNYDFLVDIFGK--LTLSEISGCVAC 60
           + L+ L  NYDF+V  +GK    L+E S C  C
Sbjct: 233 DVLEDLFKNYDFIVTEYGKGRALLNEPSNCKVC 265


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 434 EPTLESNNILLTEHISPRLQKLR 502
           E  +E  N LL E I PRL KLR
Sbjct: 189 EAKVEEINTLLREEIEPRLTKLR 211


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 579 GDKVRGNFPKRTQVVPRRHVW 641
           GD++RG  PK  Q +  RHV+
Sbjct: 55  GDRIRGFLPKDKQYLVTRHVF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,378
Number of Sequences: 5004
Number of extensions: 59216
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)