Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_D02
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537 63 3e-10
04_01_0338 + 4424928-4425072,4425158-4425233,4425350-4425515,442... 44 1e-04
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 38 0.011
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266... 38 0.015
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 38 0.015
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 31 1.7
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431... 30 2.9
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 29 6.7
>11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537
Length = 208
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Frame = +3
Query: 552 ICKRIKGLPGDKVR-----GNFP-KRTQVVPRRHVWLXGDNSSNSADSRIYGPVPAGLIR 713
+ KR+ G+ GD V GN +T VVP+ HVW+ GDN S DSR +GPVP GLI
Sbjct: 127 VVKRVVGMEGDAVTFLVDPGNSDASKTVVVPKGHVWVQGDNIYASRDSRQFGPVPYGLIT 186
Query: 714 SXVVCRVXP 740
+ CRV P
Sbjct: 187 GKIFCRVWP 195
>04_01_0338 +
4424928-4425072,4425158-4425233,4425350-4425515,
4425669-4425791
Length = 169
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 552 ICKRIKGLPGDKVRGNFPKRTQVVPRRHVWLXGDNSSNSADSRIYGPVPAGLI 710
+ KR+ LPGD ++ + + +P H W+ GDN S DSR YGP+ L+
Sbjct: 83 LVKRLIALPGDWIQVPAAQEIRQIPVGHCWVEGDNPDVSWDSRSYGPLWCALV 135
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 37.9 bits (84), Expect = 0.011
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 597 NFPKRTQVVPRRHVWLXGDNSSNSADSRIYGPVPAGLIRSXVVCRVXP 740
N+ +VP +V++ GDN +NS DS +GP+P I V R P
Sbjct: 343 NYEMEPMLVPEGYVFVLGDNRNNSFDSHNWGPLPVRNIIGRSVFRYWP 390
>03_01_0337 +
2664648-2664670,2664752-2664838,2664930-2665095,
2665817-2665891,2666931-2667038
Length = 152
Score = 37.5 bits (83), Expect = 0.015
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 558 KRIKGLPGDKVRGNFPKRTQVVPRRHVWLXGDNSSNSADSRIYGPVPAGL 707
KR+ LPG+ ++ +P H W+ GDN++ S DSR +GP G+
Sbjct: 48 KRLIALPGEWMQLPGTPDIIKIPEGHCWVEGDNAACSWDSRSFGPEVDGI 97
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 37.5 bits (83), Expect = 0.015
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 621 VPRRHVWLXGDNSSNSADSRIYGPVPAGLIRSXVVCRVXP 740
VP V++ GDN +NS DS ++GP+P+ I + R P
Sbjct: 209 VPENSVFVMGDNRNNSYDSHVWGPLPSKNILGRSIFRYWP 248
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 552 ICKRIKGLPGDKVRGNFPKRTQ-VVPRRHVWLXGDNSS----NSADSRIYGPVPAGLIRS 716
I +R+ L G ++ N K V+ + W+ DN S + DSR++GPVP I
Sbjct: 103 IVRRLAALEGYEMVSNDEKDEPFVLDKDQCWVLADNQSLKPKEARDSRLFGPVPMTDILG 162
Query: 717 XVV 725
V+
Sbjct: 163 RVI 165
>09_06_0268 +
21942591-21942690,21942821-21942904,21943116-21943192,
21943266-21943336,21943646-21943717,21943894-21943965,
21944057-21944122,21944411-21944476,21944553-21944770,
21944983-21945254,21945513-21945778,21945879-21945999,
21946094-21946230,21946362-21946518,21947055-21947189
Length = 637
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 368 ACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEHISPRL 490
AC H EY+ + +CS P + ++S+N+LL ++P L
Sbjct: 448 ACTAHA-LEYLHE--VCSPPVLHKNIKSSNVLLDADLNPHL 485
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 365 YACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEH-ISPRLQKLRRGDII 517
YAC TH F SG E + +N+ILL EH P+L L +++
Sbjct: 331 YACSTHAVFSPPA-IERLSGGIFEEVIVTNSILLPEHKCFPQLTVLSMANLV 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,368,774
Number of Sequences: 37544
Number of extensions: 332622
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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