Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_D02
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical pr...    51   1e-06
AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical ...    41   0.001
Z82052-7|CAD89750.1|  294|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical
           protein C24H11.6 protein.
          Length = 132

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/73 (38%), Positives = 39/73 (53%)
 Frame = +3

Query: 546 QXICKRIKGLPGDKVRGNFPKRTQVVPRRHVWLXGDNSSNSADSRIYGPVPAGLIRSXVV 725
           + +CKRI    GD V  +     +V P  HV+L GDN   S DSR +GPVP  L++  + 
Sbjct: 47  ELLCKRIAAKEGDPVTSHLLPSGRV-PIGHVFLRGDNGPVSTDSRHFGPVPEALVQIRLS 105

Query: 726 CRVXPFXPKLLXW 764
            R+ P  P+   W
Sbjct: 106 LRIWP--PERAGW 116



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +2

Query: 410 VMCSGPSMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSHP 541
           V+CSGPSM PT+   +++L E  S R + ++ GDI+   +P  P
Sbjct: 2   VICSGPSMHPTIHDGDLVLAERFSIRNKNVQVGDIVGCVNPQKP 45


>AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.8 protein.
          Length = 152

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 603 PKRTQVVPRRHVWLXGDNSSNSADSRIYGPVPAGLIRSXVVCRVXP 740
           P+    +P+ H W+ GDN  +  DS +YGPV   L++      + P
Sbjct: 98  PELITDIPKGHYWMEGDNPEHRHDSNVYGPVSTSLVKGRATHIIWP 143


>Z82052-7|CAD89750.1|  294|Caenorhabditis elegans Hypothetical
           protein T25E12.12 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 71  SQKFPKVSVCQRYQLKNHNY*LRVSXFQSIS*LIVMNGVEFKLLDCFR-TEKVYQVFMLW 247
           S+ FP + V   Y++K+       +  Q  S ++ +  +EF+ L+ F   E+   ++   
Sbjct: 61  SEDFPTIIVNDDYEIKHETENCAKNVMQKFSGILQIPNLEFESLEIFLWDEETRDMYFKL 120

Query: 248 IRKNFTLRNLGLYV 289
           + K F  R   +YV
Sbjct: 121 LLKYFKSRTDRIYV 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,786,382
Number of Sequences: 27780
Number of extensions: 326747
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)