Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C24
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    29   0.93 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    26   8.6  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +3

Query: 708 PCS-DPCRFTGIPVPP 752
           PCS DPC F GI +PP
Sbjct: 286 PCSMDPCNFDGISIPP 301


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 23/60 (38%), Positives = 25/60 (41%)
 Frame = +3

Query: 615 QKSTLKSEVAKPDRTIKIPGVSPWKAPXVRSPCSDPCRFTGIPVPPFLPSGKRGAFPIXP 794
           QK  LKS    P   I +P  +P  AP    P   P    G P PP  P G  GA P  P
Sbjct: 725 QKLLLKSPPPPPPAVI-VPTPAP--API---PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 627 LKSEVAKPDRTIKIPGVSPWKAPXVRSPCSDPCRFTGIPVPPFLPS 764
           + SE+  P + I+  G   WK P +R+P      + G   PP +P+
Sbjct: 317 IPSEIINP-KCIEGAGCGEWKPPMIRNP-----NYRGPWSPPMIPN 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,260
Number of Sequences: 5004
Number of extensions: 54984
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)