Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C24
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    29   5.2  
04_01_0154 - 1775693-1775942,1776834-1777588                           29   5.2  
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           29   5.2  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.9  
02_02_0691 + 12999452-12999820                                         28   9.1  

>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 669 PGVSPWKAPXVRSPCSDPCRFTGIP--VPPFLPSGKRG 776
           PG  P       +P S P  F G+P   PPF P G +G
Sbjct: 245 PGTQPPPFGAQAAPSSQPPPFMGVPGNAPPFRPPGWQG 282


>04_01_0154 - 1775693-1775942,1776834-1777588
          Length = 334

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 22/71 (30%), Positives = 28/71 (39%)
 Frame = -3

Query: 778 APRFPEGRKGGTGIPVKRXGSEXGERTXGAFQGETPGIFIVLSGFATSDLSVDFCDARQG 599
           APR P+  +GG G   +R  S    R  G   G  P       G     L +    ARQ 
Sbjct: 73  APRRPDRERGGGGAARRRAASSSRRRRRGKSVG-GPSSRRRRRGKTAGGLKLPTTAARQD 131

Query: 598 GGAYGKTPATR 566
           GGA  +  + R
Sbjct: 132 GGATRRNSSRR 142


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 28/100 (28%), Positives = 36/100 (36%)
 Frame = -3

Query: 844 PGLGRTTYTXXEIPXRRGXMGXAPRFPEGRKGGTGIPVKRXGSEXGERTXGAFQGETPGI 665
           PG G TT T   IP   G  G +   P    G +G  +          + G   G +P +
Sbjct: 64  PGHGGTT-TPTPIPGHHGGGGSSGTTPSHGGGPSGGALPSPSHGGAAPSHGGGYGASPPV 122

Query: 664 FIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWP 545
                G               GGGAYG +P+T    GS P
Sbjct: 123 TPSPGGGYGGGSPAP----SHGGGAYGSSPSTPSGGGSSP 158


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 404 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 559
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>02_02_0691 + 12999452-12999820
          Length = 122

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 539 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLESSXGALSXFR 718
           S+ P    +PR WR ++GS     I+   A  RGG  R + +  RR       GA+  FR
Sbjct: 12  SEAPVVAPKPRGWRMAVGSIGGGGISPPVA--RGGR-RGERERGRRSAGGGLTGAVDAFR 68

Query: 719 P 721
           P
Sbjct: 69  P 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,156,168
Number of Sequences: 37544
Number of extensions: 462499
Number of successful extensions: 1114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)