Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C24
         (924 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA...    31   2.2  
X85331-1|CAA59680.1|  437|Drosophila melanogaster msh protein.         29   6.8  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   9.0  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   9.0  

>AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA
            protein.
          Length = 3111

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 630  KSEVAKPDR--TIKIPGVSPWKAPXVRSPCSDPCRFTGIPVPPFLPSGKRGAFPIXPR 797
            KS    P R  TIK P  SP + P ++SP + P R      P   PS  R   P   R
Sbjct: 2243 KSPYTSPSRKATIKTPHTSPTRKPIIKSPYTSPSR-KSAKSPYTSPSRNRQRSPSPTR 2299


>X85331-1|CAA59680.1|  437|Drosophila melanogaster msh protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 734 RNTCSXLSPFGKAWRXPHXPTPXRYLXSGVXRSPQXWAGCTNPP 865
           R+T   L   GK+   PH P P  ++ S +         C +PP
Sbjct: 240 RSTPDGLDGSGKSLESPHGPPPASHMQSTILSPAALAPSCAHPP 283


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 356 ESANARGXAVCVLGALPLPRSLTRCARSFGCG 451
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 356 ESANARGXAVCVLGALPLPRSLTRCARSFGCG 451
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,509,468
Number of Sequences: 53049
Number of extensions: 719686
Number of successful extensions: 1553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4546383066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)