Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C24
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    29   4.7  
U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    29   6.2  

>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 657 TIKIPGVSPWKAPXVRSPCSDPCRFTGIPVPPFLP 761
           TIKIP + P   P ++ P   P     + +P F+P
Sbjct: 123 TIKIPDIIPITLPTIKIPEVVPTNLPTVEIPHFIP 157


>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -3

Query: 892 DKGXPVXXERGVXAPS--PGLGRTTYTXXEIPXRRGXMGXAPRFPEGRKGGTGIPVKRXG 719
           DKG P     GV  P+  PG     Y     P + G  G  PR P G KG TG    R G
Sbjct: 50  DKGFP-----GVAGPAGEPGEPGHIYVSDGPPGKDGETG--PRGPPGEKGRTG----RDG 98

Query: 718 SE--XGERTXGAFQG 680
            +   GER    +QG
Sbjct: 99  EDGLPGERGERGYQG 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,907
Number of Sequences: 27780
Number of extensions: 350590
Number of successful extensions: 751
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)