Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C22
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.51 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.51 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.51 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = +2

Query: 725 GGPPPGXXKXRGFPXXXPXGPXXSXLGKXEXXPPPXXGXGGGFXXXPXG 871
           GGPPPG     GF      G      G     P    G  GGF   P G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 558 GGGKPXPPPXXPGAXXFXGGGGXGGXKKXPXXPGGG 451
           GGG   PPP   G   F G GG G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
 Frame = -3

Query: 865 GXXXKPPPXPXGXRGXXFXFXXGGXXGAPGGXXGEXPXFXXPRGGAPXXSXG-XFXFXFX 689
           G    PPP P G  G       G   G  GG  G    F    GG      G        
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 688 GGGP 677
           GGGP
Sbjct: 255 GGGP 258



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -1

Query: 864 GXXKNPPPXPXXGGGXXSFXPRXEXXGPXGXXXGXPRXF 748
           G    PPP P   GG   F       G  G   G P  F
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 27/122 (22%), Positives = 28/122 (22%)
 Frame = +3

Query: 435 PXKKXPPPXGXGXFFXXPXPXPPPKXPXPXXXGGGXGVXPPXGGXXXFPXXRGEHPXKIF 614
           P    PP          P        P P       G  PP              P  I 
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 615 XXXAPKGXQXXKGXXWGXXKXGPPPXKXXKKXPXLXXGAPPRGXXKXGXSPXXPPGAPXX 794
              AP                  PP       P L   APP        +P  PP AP  
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456

Query: 795 PP 800
           PP
Sbjct: 457 PP 458



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +2

Query: 731 PPPGXXKXRGFPXXXPXGPXXSXLGKXEXXPPPXXGXGGGFXXXPXGXXXPGGRP 895
           PPP   + RG P   P G   S        PPP     G     P G   P   P
Sbjct: 314 PPPPSRRNRGKP---PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +1

Query: 448 PPPPXXXGXFFXXPXPXPPXKXPGPXXXGGGXGFXPPXGGXXXSPK 585
           PPPP   G     P P PP   P P    GG  +  P       PK
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 444 KXPPPXGXGXFFXXPXPXPPPKXPXPXXXGGGXGVXPPXG 563
           K PPP         P P P P  P     GG     PP G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = +2

Query: 680 PPPXKXKXKXPPTXXGGPPPGXXKXRGFPXXXPXGPXXSXLGKXEXXPPPXXGXGGG 850
           PPP        P     PPP      G P   P  P  +  G     PPP     GG
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIM--GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,598
Number of Sequences: 5004
Number of extensions: 28108
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)