Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C21
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding pr...    80   2e-15
L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box bindin...    80   2e-15
AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription...    80   2e-15
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    31   1.1  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    31   1.1  
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    28   7.8  

>U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding
           protein protein 1 protein.
          Length = 340

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 46/79 (58%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +1

Query: 643 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVL*EXGT 822
           A M P TP S     +P LQNIVSTVNL  +LDLKKIALHARNAEYNPKRFAAV+     
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIRE 209

Query: 823 ENXS--LISHLVNGCTGAK 873
              +  + S     CTGAK
Sbjct: 210 PRTTALIFSSGKMVCTGAK 228


>L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box binding
           protein protein.
          Length = 340

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 46/79 (58%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +1

Query: 643 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVL*EXGT 822
           A M P TP S     +P LQNIVSTVNL  +LDLKKIALHARNAEYNPKRFAAV+     
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIRE 209

Query: 823 ENXS--LISHLVNGCTGAK 873
              +  + S     CTGAK
Sbjct: 210 PRTTALIFSSGKMVCTGAK 228


>AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription
           factor TFIID protein.
          Length = 340

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 46/79 (58%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +1

Query: 643 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVL*EXGT 822
           A M P TP S     +P LQNIVSTVNL  +LDLKKIALHARNAEYNPKRFAAV+     
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIRE 209

Query: 823 ENXS--LISHLVNGCTGAK 873
              +  + S     CTGAK
Sbjct: 210 PRTTALIFSSGKMVCTGAK 228


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 664 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKR 792
           P+  D  I  Q++N+V    L   +DL+K+A++  N  Y  ++
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK 298


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 664 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKR 792
           P+  D  I  Q++N+V    L   +DL+K+A++  N  Y  ++
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK 298


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 664 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKR 792
           P+  D  I  Q++N+V    L   +DL+K+A++  N  Y  ++
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK 298


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 543 ATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTT 668
           ++DD++ NS   + SDD  +   K   +K   S  +DSSD++
Sbjct: 78  SSDDSSDNSDSSESSDDDKKSKKKKKKSKKDSSDSSDSSDSS 119


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +3

Query: 447 SGFVANCRIWRNHGDSTEVYAHICTNSQLCNSA---TDDAASNSTKYDVSDDSCRKSIKS 617
           S   +NC  W  +G  T  +      +Q C S      D++ +S+    +  S   S  +
Sbjct: 3   SDSASNCANWVANGFCTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAA 62

Query: 618 TNAKPS*SCPNDSSDTTLCRPWNFTTVTKHS 710
           T++  S S  + SS +      + TT    S
Sbjct: 63  TSSDDSSSSSSSSSSSASSTSSSDTTTADSS 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,731
Number of Sequences: 27780
Number of extensions: 316634
Number of successful extensions: 947
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)