Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C18
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    49   8e-07
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.6  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   8.4  

>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
 Frame = +3

Query: 315 KVQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCI--HNKIQMEAGSKKE 488
           ++  + Y+++YGN+K   G   + +  I  + D N + FH+ + I  H     +A +   
Sbjct: 120 ELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHLHFTQKANAVNG 179

Query: 489 KNIQDVPINNMLPANSMVGITETSSVN------GLNSRQMMVFNLIRGS-TVEQGISKQD 647
            N      +N L  N++      +S+        L   QM V   I  +    +G+  + 
Sbjct: 180 ANAPGYGTSNALGYNNISSNGAANSLEQKLAEYSLTPAQMTVMQAIHSAPETNEGVHVRQ 239

Query: 648 MYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRA 761
           +  S+      ++   + +++  EG IY+TIDE HF++
Sbjct: 240 LAQSVG---PGIDLTAVTDFLQQEGIIYTTIDENHFKS 274


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = -3

Query: 175 HYLNFCTPYFHTXXSRMQS-----LPDDYRCCP 92
           HYL+ C+PY  +   R++S     LPD  + CP
Sbjct: 227 HYLSDCSPYTGSFVQRIRSILTEPLPDISKSCP 259


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 345  YGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIH 452
            YG +K      V    ++M  TDV I++ HY   IH
Sbjct: 1043 YGTLKPVNVGSVKAVLELMERTDVPILSMHYAAYIH 1078


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 474 GSKKEKNIQDVPINNML--PANSMVGITETS--SVNGLNSRQMMVFNLIRGSTVEQGISK 641
           G+K       V +N  +   +N M  +TE +  S   + +R + + NLI G  +      
Sbjct: 378 GNKLHAQFACVGLNQAMIDKSNGMAILTELAKASSQSIPTRVLQLHNLITGDEIMDVQEY 437

Query: 642 QDMYASLKDRMT 677
           +D+Y S+K + +
Sbjct: 438 EDIYESVKTQFS 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,581
Number of Sequences: 5004
Number of extensions: 56689
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)