Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C18
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594...    66   5e-11
02_05_0049 - 25423260-25423344,25423415-25423483,25424143-254242...    50   3e-06
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212...    29   5.1  
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209...    29   5.1  

>02_05_1313 -
           35658599-35658683,35659231-35659313,35659394-35659489,
           35659615-35659693,35659775-35659852,35659989-35660030,
           35660435-35660532,35660628-35660747,35660840-35660926
          Length = 255

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 44/171 (25%), Positives = 81/171 (47%)
 Frame = +3

Query: 249 GRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIIT 428
           GR+  + W++  A   E  +   VQ   Y+ + G++K  +  K   AF I PVTD N +T
Sbjct: 95  GRLDFIRWVNDGADSAETAA---VQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVT 151

Query: 429 FHYFQCIHNKIQMEAGSKKEKNIQDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLI 608
            H+ QC    ++M   + K +        + + ++S  G +E ++   + S    V ++ 
Sbjct: 152 LHFIQC----VRMHLENTKSQIGSPAKTYSAMGSSSSNGFSEMTTPTSVKSNPAPVLSVT 207

Query: 609 RGSTVEQGISKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRA 761
            G       SK D+   + +   +      ++++   GHIYSTIDE H+++
Sbjct: 208 NG-------SKTDLNTEVLNVFREPANVVAIDYLADIGHIYSTIDESHYKS 251


>02_05_0049 -
           25423260-25423344,25423415-25423483,25424143-25424231,
           25424315-25424407,25424516-25424594,25425557-25425657,
           25425864-25425944,25426369-25426740
          Length = 322

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
 Frame = +3

Query: 330 DYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQM-EAGSKKEKNIQDV 506
           DY+ + G +K  +G + ++A+ +  +T+ N +T H+  C+H  +++    S+   N    
Sbjct: 162 DYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLELTRPKSQVNANTATG 221

Query: 507 PINNMLPANSMV----GITETSSV------NGLNSRQM-MVFNLIRGSTV---EQGISKQ 644
             N  +P +SM      +T  +S        G  +  + +V N+     V   + G+   
Sbjct: 222 TPNQTMPRDSMAYNQSPLTNQASTFSAPQNTGTGTNMIDLVLNVFHDPAVMNDDHGVGVD 281

Query: 645 DMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRAT 764
             Y S +  + +     I+      GH+Y+TID+ H+++T
Sbjct: 282 --YVSRRLNLPEETVGKIIIDQVDLGHLYATIDDHHYKST 319


>12_01_0286 -
           2127622-2127897,2128611-2128997,2129195-2129550,
           2129923-2130046,2130128-2130196,2131190-2131238,
           2132222-2132336,2132854-2132903,2133000-2133137,
           2134182-2134228
          Length = 536

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 606 IRGSTVEQGISKQDMYASLKDRMTKVEFENILEW 707
           I GS  E  +SK DM    K R+ + +FE   EW
Sbjct: 428 IAGSDEEDDLSKMDMGGRAKGRLHRWDFETEEEW 461


>11_01_0283 -
           2095291-2095566,2095962-2096348,2096523-2096881,
           2097275-2097398,2097480-2097548,2098536-2098584,
           2099185-2099299,2099823-2099872,2099969-2100106,
           2101136-2101197,2102066-2102180,2103433-2103664,
           2103748-2103826,2103925-2103993,2104079-2104171,
           2104577-2104622,2105223-2105268,2105354-2105411,
           2105577-2105615,2105712-2105783,2105930-2106021,
           2106824-2106923
          Length = 889

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 606 IRGSTVEQGISKQDMYASLKDRMTKVEFENILEW 707
           I GS  E  +SK DM    K R+ + +FE   EW
Sbjct: 781 IAGSDEEDDLSKMDMGGRAKGRLHRWDFETEEEW 814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,223
Number of Sequences: 37544
Number of extensions: 314145
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)