Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C18
(903 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replicati... 91 4e-18
DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,... 91 4e-18
CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein. 91 4e-18
BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,... 91 4e-18
BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,... 91 4e-18
BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,... 91 4e-18
AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2... 91 4e-18
AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2... 91 4e-18
AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,... 91 4e-18
Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4, 3... 66 1e-10
U24186-1|AAB08488.2| 261|Homo sapiens replication protein A com... 66 1e-10
BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,... 66 1e-10
BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,... 66 1e-10
BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,... 66 1e-10
BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,... 66 1e-10
BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,... 66 1e-10
AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A c... 66 1e-10
AL109927-8|CAI21774.1| 122|Homo sapiens replication protein A2,... 63 1e-09
AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2... 43 0.002
BC012147-1|AAH12147.1| 310|Homo sapiens JAM3 protein protein. 30 10.0
BC010690-1|AAH10690.1| 309|Homo sapiens Unknown (protein for IM... 30 10.0
AY358335-1|AAQ88701.1| 310|Homo sapiens SHATr/JAM3 protein. 30 10.0
AK075309-1|BAC11538.1| 310|Homo sapiens protein ( Homo sapiens ... 30 10.0
AK074769-1|BAC11195.1| 310|Homo sapiens protein ( Homo sapiens ... 30 10.0
AJ416101-1|CAC94776.1| 355|Homo sapiens junction adhesion molec... 30 10.0
AJ344431-1|CAC69845.1| 310|Homo sapiens junctional adhesion mol... 30 10.0
AF448478-1|AAM20925.1| 310|Homo sapiens junctional adhesional m... 30 10.0
AF356518-1|AAK27221.1| 310|Homo sapiens junctional adhesion mol... 30 10.0
>J05249-1|AAA36560.1| 270|Homo sapiens protein ( Human replication
protein A 32-kDa subunit mRNA, complete cds. ).
Length = 270
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 108 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 166
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 167 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 225
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 226 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269
>DQ001128-1|AAX84514.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 108 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 166
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 167 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 225
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 226 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269
>CR450348-1|CAG29344.1| 270|Homo sapiens RPA2 protein.
Length = 270
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 108 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 166
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 167 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 225
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 226 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269
>BC021257-1|AAH21257.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 108 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 166
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 167 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 225
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 226 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269
>BC012157-1|AAH12157.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 108 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 166
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 167 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 225
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 226 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269
>BC001630-1|AAH01630.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 108 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 166
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 167 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 225
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 226 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269
>AL109927-12|CAI21778.1| 278|Homo sapiens replication protein A2,
32kDa protein.
Length = 278
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 116 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 174
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 175 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 233
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 234 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 277
>AL109927-11|CAI21777.1| 270|Homo sapiens replication protein A2,
32kDa protein.
Length = 270
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 108 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 166
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 167 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 225
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 226 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269
>AL109927-9|CAI21775.1| 358|Homo sapiens replication protein A2,
32kDa protein.
Length = 358
Score = 91.5 bits (217), Expect = 4e-18
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKI 461
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I N
Sbjct: 196 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI-NAH 254
Query: 462 QMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGI 635
+ + + + + PI+N M A + G NGL Q V NLI+ +G+
Sbjct: 255 MVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVAQNQVLNLIKACPRPEGL 313
Query: 636 SKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRATDA 770
+ QD+ LK M+ + ++++ EGHIYST+D++HF++TDA
Sbjct: 314 NFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 357
>Z86061-1|CAI42256.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>U24186-1|AAB08488.2| 261|Homo sapiens replication protein A
complex 34 kd subunit homolog Rpa4 protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>BC104014-1|AAI04015.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>BC104013-1|AAI04014.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>BC069824-1|AAH69824.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>BC069808-1|AAH69808.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>BC069791-1|AAH69791.1| 261|Homo sapiens replication protein A4,
34kDa protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>AF494047-1|AAM09569.1| 261|Homo sapiens replication protein A
complex 34 kDa subunit RPA4 protein.
Length = 261
Score = 66.5 bits (155), Expect = 1e-10
Identities = 40/150 (26%), Positives = 76/150 (50%)
Frame = +3
Query: 318 VQVNDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQMEAGSKKEKNI 497
+ V Y++++G +K GTK L KI + D+N T H + ++ + ++ ++++ +
Sbjct: 119 LSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDK-ARRDTTV 177
Query: 498 QDVPINNMLPANSMVGITETSSVNGLNSRQMMVFNLIRGSTVEQGISKQDMYASLKDRMT 677
+ VP++ S V + + N Q V LI ++G S ++ A L D
Sbjct: 178 ESVPVSP-----SEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSV 232
Query: 678 KVEFENILEWMCGEGHIYSTIDEEHFRATD 767
K + ++++ EGHIY T+D EHF++ D
Sbjct: 233 KA-IKEAIDYLTVEGHIYPTVDREHFKSAD 261
>AL109927-8|CAI21774.1| 122|Homo sapiens replication protein A2,
32kDa protein.
Length = 122
Score = 63.3 bits (147), Expect = 1e-09
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Frame = +3
Query: 411 DVNIITFHYFQCIHNKIQMEAGSKKEKNIQDVPINN--MLPANSMVGITETSSVNGLNSR 584
D+N T H + I N + + + + + PI+N M A + G NGL
Sbjct: 3 DMNEFTTHILEVI-NAHMVLSKANSQPSAGRAPISNPGMSEAGNFGG-NSFMPANGLTVA 60
Query: 585 QMMVFNLIRGSTVEQGISKQDMYASLKDRMTKVEFENILEWMCGEGHIYSTIDEEHFRAT 764
Q V NLI+ +G++ QD+ LK M+ + ++++ EGHIYST+D++HF++T
Sbjct: 61 QNQVLNLIKACPRPEGLNFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYSTVDDDHFKST 119
Query: 765 DA 770
DA
Sbjct: 120 DA 121
>AL109927-10|CAI21776.1| 179|Homo sapiens replication protein A2,
32kDa protein.
Length = 179
Score = 42.7 bits (96), Expect = 0.002
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +3
Query: 288 MEVEDTSSPKVQV--NDYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIH 452
++ +DTSS V Y+++ G++++ + K L+AFKIMP+ D+N T H + I+
Sbjct: 112 VDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVIN 168
>BC012147-1|AAH12147.1| 310|Homo sapiens JAM3 protein protein.
Length = 310
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 37 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 70
>BC010690-1|AAH10690.1| 309|Homo sapiens Unknown (protein for
IMAGE:3875338) protein.
Length = 309
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 36 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 69
>AY358335-1|AAQ88701.1| 310|Homo sapiens SHATr/JAM3 protein.
Length = 310
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 37 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 70
>AK075309-1|BAC11538.1| 310|Homo sapiens protein ( Homo sapiens
cDNA FLJ90828 fis, clone Y79AA1001727, highly similar to
Junctional adhesion molecule 3 precursor. ).
Length = 310
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 37 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 70
>AK074769-1|BAC11195.1| 310|Homo sapiens protein ( Homo sapiens
cDNA FLJ90288 fis, clone NT2RP1000981, highly similar to
Junctional adhesion molecule 3 precursor. ).
Length = 310
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 37 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 70
>AJ416101-1|CAC94776.1| 355|Homo sapiens junction adhesion molecule
3 protein.
Length = 355
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 82 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 115
>AJ344431-1|CAC69845.1| 310|Homo sapiens junctional adhesion
molecule-2 protein.
Length = 310
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 37 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 70
>AF448478-1|AAM20925.1| 310|Homo sapiens junctional adhesional
molecule-3 protein.
Length = 310
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 37 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 70
>AF356518-1|AAK27221.1| 310|Homo sapiens junctional adhesion
molecule 3 precursor protein.
Length = 310
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 691 SNSTFVIRSFSEAYISCLLIPCSTVEPRIRLKTI 590
SN T V++ F +SC++ T +PRI K I
Sbjct: 37 SNRTPVVQEFESVELSCIITDSQTSDPRIEWKKI 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,126,930
Number of Sequences: 237096
Number of extensions: 1880704
Number of successful extensions: 4620
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4593
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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