Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C16
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...   111   6e-25
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    29   4.5  

>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score =  111 bits (267), Expect = 6e-25
 Identities = 52/103 (50%), Positives = 72/103 (69%)
 Frame = +1

Query: 214 DEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQN 393
           +E+ LTFA+ +   +   VVKQ+DVP+ +G  G+L  HVPT+ VL+PGVV++  N+G   
Sbjct: 29  EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQ 88

Query: 394 KIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQ 522
           ++FVSSGT++VN D S QVLAEE   +E ID SAA+  L  AQ
Sbjct: 89  RLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQ 131


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 202 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 297
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 202 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 297
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/100 (23%), Positives = 49/100 (49%)
 Frame = +1

Query: 241 GNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 420
           G +   +K  +K+++ P +SG   +  KH   ++    GVV   +N+  +    V++ T+
Sbjct: 24  GKRFSTEKFNLKKVNSPKYSG---LANKHAIDVSAAAKGVVVSTKNEKGRPAKAVTTSTL 80

Query: 421 TVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSA 540
           +    +SV+ LA+ A      ++ A + A +  +S+   A
Sbjct: 81  SKTPVASVRRLAKNA-GFNKFNKLAQRRAAAIVRSQVKKA 119


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 411 RRYEDFILFPIIFKNCNNTRSKNSQ 337
           RR++  +  P+++ N NN  SKN++
Sbjct: 274 RRFDVTVFLPVVYNNVNNYNSKNAE 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,448
Number of Sequences: 27780
Number of extensions: 269214
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)