Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C15
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     60   6e-10
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   4.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.8  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   6.3  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   8.3  

>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
 Frame = +1

Query: 121 SFFPMSMSMLYGPIR-DLLPEL--LTFPHNVTFKHGNYVPREDLAVGSGESPQFDLILCL 291
           +++P+S    +  I   L P L    FPHN+ F+  +++  E          +F +IL L
Sbjct: 101 NYYPISSIKKFSRIPVQLQPPLNKQNFPHNIEFETADFLRWES-------KRKFKIILAL 153

Query: 292 STTKWMHLNWGDAGLKRAFRRMFADLRPGGKLVLEAQNWASYKKKKRLTPTIYENFNSIE 471
           S +KW+HLN  D G+ + F ++ + L   G L+LE Q W SY K  +      +   +++
Sbjct: 154 SVSKWVHLNNHDEGIIKFFGKISSLLETNGVLILEPQGWDSYLKAAKKISVFNQTPENLK 213

Query: 472 LFPIKFRDYL 501
           + P  F   L
Sbjct: 214 IQPDAFEHLL 223


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 632  TPMCPRLTTGPRPSSRVALCTRPSSPPTG-PATTRPSXRR---RHALLAQPRLLHGMIRP 799
            TP  P ++  P PS+       PS+PP   PA++ PS      R ALL Q   +H   R 
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSALLQQ---IHTGTRL 1762

Query: 800  STTLAATRYAPV 835
              T+   +  P+
Sbjct: 1763 KKTVTTDKSKPI 1774


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 656 TGPRPSSRVALCTRPSSPPTGPATTRPSXRRRHALLAQPRLLHGMIRPSTT-LAATRYAP 832
           T   PSSRV +    SSPP    +++P  +  H       L H    P TT L++   +P
Sbjct: 106 TNLNPSSRVEIINLNSSPPNS-LSSQPKHQEFH-------LFHTPTIPRTTQLSSKTSSP 157

Query: 833 VVXP 844
           +V P
Sbjct: 158 IVIP 161


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 653 TTGPRPSSRVALCTRPSSPPTGPATT 730
           ++ P PS+  +  T  S PPTG +TT
Sbjct: 328 SSSPLPSTSTSCTTSTSIPPTGNSTT 353


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = -2

Query: 516 HLRRQQVISKLDRKQLDGIEIFIYSRRQXXXXXXXXXXXGFQY*FPARTQVSEHTSERTF 337
           H +    + K++  +LDG E+F+  +R                  P+R+Q + H ++++F
Sbjct: 150 HDQAANAVDKMNNAELDGEELFVSIKRFPFESLHKNHKHYENSYRPSRSQNNSHYNDKSF 209


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 127  RNSVLVHAYKKTFYSFLASFN 65
            RN+ L  +   TFYSFL S+N
Sbjct: 1378 RNTPLKRSLSTTFYSFLISYN 1398


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +1

Query: 214 HGNYVPREDLAVGSGESPQFDLILCLSTTKWMHLNWGDAGLKRAFRRMFADLRPGGKLVL 393
           +GN+  RE +  GS  S +  LIL L+    + L+ G + L         D+  G   ++
Sbjct: 325 YGNFYDREVITCGSPCSGEA-LILGLNVLSKVDLSEGTSILGCEM----TDI--GVHHLI 377

Query: 394 EAQNWASYKKKKRLTPTIYENFNSIE-LFPIKFRD 495
           E   W S  +     PT Y N + +E L  +++ D
Sbjct: 378 ETMKWMSAGRTVLADPTFYNNTDHVEQLLSLEYAD 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,503,181
Number of Sequences: 5004
Number of extensions: 74262
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)