Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C15
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 104 1e-22
11_04_0027 - 12453488-12453547,12454972-12455673,12455907-124559... 33 0.23
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 33 0.23
02_01_0698 + 5216899-5217057,5217707-5218060 33 0.23
08_02_1253 - 25602258-25602640,25603305-25603767 31 0.94
01_06_1464 + 37537218-37537387,37537738-37537897,37539521-375397... 31 1.6
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22... 29 3.8
09_06_0297 - 22112619-22112912,22113469-22113630,22113734-22113739 29 3.8
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839... 29 6.6
06_03_1089 - 27521291-27522124 29 6.6
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 29 6.6
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 29 6.6
12_02_1102 + 26088927-26090321 28 8.7
03_02_0183 - 6225827-6226414,6226478-6226512,6227244-6227331,622... 28 8.7
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 28 8.7
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 104 bits (249), Expect = 1e-22
Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Frame = +1
Query: 202 VTFKHGNYVPREDLAVGSGESPQFDLILCLSTTKWMHLNWGDAGLKRAFRRMFADLRPGG 381
V+F+ N+V D S E Q+D I+CLS TKW+HLNWGD G+ F +++ LRPGG
Sbjct: 181 VSFRRENFV---DSMCTSSE--QYDTIVCLSVTKWIHLNWGDDGIITLFVKIWRLLRPGG 235
Query: 382 KLVLEAQNWASYKKKKRLTPTIYENFNSIELFPIKFRDYLLSPEVGF-SKCCILGVPQHA 558
++E Q W SY++ + ++ ENFN+I + P KFR+ LL ++GF S + + A
Sbjct: 236 VFIMEPQPWTSYRRNRLVSEVAKENFNTILIHPDKFREILLD-KIGFRSVEVVTDKLEGA 294
Query: 559 SKGFRRPIQLYIK 597
GF RPI++Y K
Sbjct: 295 VTGFDRPIEVYHK 307
>11_04_0027 -
12453488-12453547,12454972-12455673,12455907-12455940,
12456005-12456125,12456509-12457139
Length = 515
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2
Query: 761 LAQPRLLHGMIRPSTTLAATRYAPVVXPAA 850
L +P +HG++ P+TT+ T+ APV+ PAA
Sbjct: 174 LKEPLKVHGVVSPATTILVTK-APVIQPAA 202
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 33.5 bits (73), Expect = 0.23
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 629 RTPMCPRLTTGPRPSSRVALCTRPSSPPTGPATTRPSXRRRHALLAQPRLLHG 787
R +CPRL + P A T ++PP P +P RRR L P HG
Sbjct: 44 RRELCPRLVSSP------AKLTDDATPPQPPPQPQPGDRRRRPRLPDPPRPHG 90
>02_01_0698 + 5216899-5217057,5217707-5218060
Length = 170
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +2
Query: 416 IRRRSV*RLLYMKISIPSSCFRSSFEITCCRRRWGSASAAY*VSRNTQARVSGVRSNCT* 595
+R SV RL + R E+ CC RRW A+AA + T R + +C
Sbjct: 73 VRLGSVLRLRVRLFGVVGLLLRCLEELNCCPRRWSPATAA--AAATTVMRAQRLSQDCRR 130
Query: 596 REISLRAGLDGRT 634
R ++ A G +
Sbjct: 131 RRLAAPAEAGGES 143
>08_02_1253 - 25602258-25602640,25603305-25603767
Length = 281
Score = 31.5 bits (68), Expect = 0.94
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +2
Query: 635 PMCPRLTTGPRPSSRVALCTRPSSPPTGPATTRPSXRRRHA--LLAQPRLLHGMIRP 799
P L TG R +S SPPT T+ PS + HA + Q HG RP
Sbjct: 16 PRSSALNTGDRAASTARCAWMSVSPPTEKDTSEPSGQPNHAGEMRGQVGGRHGYARP 72
>01_06_1464 +
37537218-37537387,37537738-37537897,37539521-37539787,
37540541-37540646,37541411-37541678,37541915-37542020,
37542891-37542950,37544349-37544445,37544613-37544803,
37545518-37545583,37545879-37545944,37547510-37547583,
37547910-37548000,37548079-37548236,37548424-37548466,
37548621-37548686,37549113-37549190,37549361-37549453
Length = 719
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 212 LKVTLCGNVNSSGNKSLIGPYNIDIDIGKKLCPC 111
+++ + G + S G +SL+ P N ++ + ++LC C
Sbjct: 496 IEIAMEGEMLSKGKESLLIPINAEVAVARELCKC 529
>11_01_0029 +
226459-226973,227053-227424,227533-227688,229513-229595,
229665-229728,230209-230596
Length = 525
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 668 PSSRVALCTRPSSPPTGPATTRPSXRRRHALLAQPRLLHGMIRPS-TTLAATRYAPV 835
PS+ T P PP P+T P+ +L P LH + S + L+A R +PV
Sbjct: 10 PSTTATTTTSPPPPP--PSTPPPASSSSSSLAKLPLRLHSLASSSRSLLSALRRSPV 64
>09_06_0297 - 22112619-22112912,22113469-22113630,22113734-22113739
Length = 153
Score = 29.5 bits (63), Expect = 3.8
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 464 PSSCFRSSFEITCCRRRWGSASAAY*VSRNTQARVSGVRSNCT*REISLRAGLDGRTPMC 643
PS R +T RRRWG+ V + A V G ++ +E + ++ +
Sbjct: 71 PSPSPRHQLALTDERRRWGATEHEDAVDEHPGAMVRGEGAD---KEEEEAPPTEKKSRLL 127
Query: 644 PRLTT-GPRPSSRVALCTRPS-SPP 712
P ++T P SSR+ L +R S SPP
Sbjct: 128 PSISTAAPPSSSRIFLPSRRSQSPP 152
>07_03_0615 +
19983003-19983238,19983297-19983558,19983651-19983906,
19983982-19984044,19984131-19984570
Length = 418
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 644 PRLTTGPRPSSRVALCTRPSSPPTG----PATTRPSXRR 748
P + TGPRP++ V RP+ PP G P +T PS R
Sbjct: 230 PPVPTGPRPAAHV---PRPTPPPHGGFRAPFSTPPSSAR 265
>06_03_1089 - 27521291-27522124
Length = 277
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +2
Query: 668 PSSRVALCTRPSSPPTG-PATTRPSXRRRHALLAQPRLLHG 787
P+S A T P PPT A RP H + P +HG
Sbjct: 172 PASPAASPTPPPPPPTERSADVRPMPPEGHFFIPHPHFMHG 212
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/62 (32%), Positives = 23/62 (37%)
Frame = +2
Query: 644 PRLTTGPRPSSRVALCTRPSSPPTGPATTRPSXRRRHALLAQPRLLHGMIRPSTTLAATR 823
P L + P + A PS+PP A T S RR Q H R T L A
Sbjct: 247 PPLNSTATPRAAAAAAATPSTPPERKADTHHSHRRGIRHKQQQHHQHPRRRKDTVLLAAA 306
Query: 824 YA 829
A
Sbjct: 307 AA 308
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 644 PRLTTGPRPSSRVALCTRPSSPPTG----PATTRPSXRR 748
P + TGPRP++ V RP+ PP G P +T PS R
Sbjct: 623 PPVLTGPRPAAHV---PRPTPPPHGGFRAPFSTPPSSAR 658
>12_02_1102 + 26088927-26090321
Length = 464
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 575 VRSNCT*REISLRAGLDGRTPMCPRLTTGPRPSSRVALCTRPSSPPTGPATTRPS 739
V+S+ + ++L R P+ P G P R C + P P TT+P+
Sbjct: 401 VKSHPFFKSLNLALLRSSRPPVVPGAGAGAAPLHRSQSCKAAPTTPPPPTTTKPA 455
>03_02_0183 -
6225827-6226414,6226478-6226512,6227244-6227331,
6228892-6228900
Length = 239
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +1
Query: 511 EVGFSKCCILGVPQHASKGFRRPIQLYIKGDFTPSRARW--SDAYVPSSHHRPEAEQPRR 684
E+G CCIL P+H RR ++ + RW Y+P + P A
Sbjct: 95 ELGGDDCCILHSPRHVGARHRR-LRPPSSTSHVGASCRWPHPPPYMPRQNSSPAAAS--S 151
Query: 685 TVYAP 699
+YAP
Sbjct: 152 VIYAP 156
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 701 SSPPTGPATTRPSXRRRHALLAQPRLLHGMIRPSTTLAATRYAP 832
S P P R + RR LA PR PST +AA YAP
Sbjct: 11 SFPRPAPPPRRCAPRRHRRALA-PRAASSSPSPSTAVAAPVYAP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,434,947
Number of Sequences: 37544
Number of extensions: 551792
Number of successful extensions: 1844
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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