Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C13
(962 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.020
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.060
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.060
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.42
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.98
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 5.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.7 bits (76), Expect = 0.020
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +1
Query: 634 TPXKPXKNXGKKXXXKPQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXP 801
TP ++ P PP P PPP A P PP PPP P P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMS---VPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 32.7 bits (71), Expect = 0.079
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +1
Query: 679 KPQPPXXPXEKPXXPPPXXAXXPPXXPPXXPP-PEXPPKKXPXXXP 813
+PQ P PPP PP PP PP P PP P P
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 681 APTPXXTXGKTXXPPPXGGXSXPXXPPXXTPPXXPPQKTXRGP 809
APTP PPP P PP PP P P
Sbjct: 1704 APTPPPPPMSV--PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 688 PPXXPXEKPXXPPPXXAXXPPXXPP--XXPPPEXPPKKXPXXXPGXP 822
PP P + PP A PP PP PPP PP P P P
Sbjct: 1690 PPVRP--QSAAPPQMSAPTPPP-PPMSVPPPPSAPP--MPAGPPSAP 1731
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.060
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 700 PXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKK 795
P P PPP PP PP PPP K+
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +1
Query: 736 AXXPPXXPPXXPPP---EXPPKKXPXXXPG 816
A PP PP PPP E P + P PG
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +3
Query: 705 GKTXXPPPXGGXSXPXXPPXXTPPXXPPQKTXRGP 809
G PPP G P PP PP ++ + P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +1
Query: 724 PPXXAXXPPXXPPXXPPPEXPPKKXP 801
PP PP P PP + PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.060
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Frame = +1
Query: 685 QPPXXPXEKPXXPPPXXAXXP------PXXPPXXPPPEXP--PKKXPXXXPGXP 822
+PP +P PPP A P P P PPP P P K P P P
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 29.5 bits (63), Expect = 0.74
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Frame = +1
Query: 628 PXTPXKPXKNXGKKXXXKPQPPXXPXEKPXXP---PPXXAXXPPXXPPXXP---PPEXP- 786
P TP + PP P P P PP + PP P P PP P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 787 -PKKXPXXXPGXP 822
P P P P
Sbjct: 190 LPSAVPPMPPKVP 202
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPP 777
P P P + P P + PP P PPP
Sbjct: 174 PAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXP-PKKXPXXXPGXP 822
P P P + PP A P PP P P P K P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Frame = +1
Query: 637 PXKPXKNXGKKXXXKPQPPXXPXEKPXXPPPXXAXXPPXXPPXXPP-----PEXPPKKXP 801
P +P P P P PPP P PP P P PPK P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +1
Query: 628 PXTPXKPXKNXGKKXXXKPQPPXXPX--EKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXP 801
P P +P + PQPP P E P P P A P P PP P
Sbjct: 557 PSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEV 616
Query: 802 XXXPGXP 822
P P
Sbjct: 617 PSVPQRP 623
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = +1
Query: 628 PXTPXKPXKNXGKKXXXKPQPPXXPX--EKPXXPPPXXAXXPPXXPPXXPPPEXP 786
P P P + PQ P P E P P P A P P PP P
Sbjct: 632 PSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +1
Query: 628 PXTPXKPXKNXGKKXXXKPQ--PPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXP 801
P T +P + P PP P PP PP PP PP P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Query: 802 XXXPGXP 822
P P
Sbjct: 430 SLPPSAP 436
Score = 30.7 bits (66), Expect = 0.32
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Frame = +1
Query: 628 PXTPXKPXKNXGKKXXXKPQ-----PPXXPXEKPXX---PPPXXAXXPPXXPPXXPPPEX 783
P P P N PQ PP P P PPP + PP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPA-PPPAI 395
Query: 784 PPKKXPXXXP 813
P + P P
Sbjct: 396 PGRSAPALPP 405
Score = 29.1 bits (62), Expect = 0.98
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPP-PXXAXXPPXXPPXXPPPEXPPKKXP 801
P P P P PP P P PP P P P P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXPXXXPGXP 822
P PP P P PP P P PP P G P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/45 (28%), Positives = 13/45 (28%)
Frame = +1
Query: 688 PPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXPXXXPGXP 822
PP P PP PP PPP P P P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXPXXXP 813
P P P P PP PP P P P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.42
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = +1
Query: 655 NXGKKXXXKPQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXPXXXPGXP 822
N G+K P+P P P P P PP PP P K P P
Sbjct: 953 NDGRKASG-PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAP 1007
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPP 789
P PP P E P P P PP PP PP P
Sbjct: 1190 PVPP--PSEAPPVPKP-SVGVPPVPPPSTAPPVPTP 1222
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 661 GKKXXXKPQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXP 801
G KP P P P PP PP E PP P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/81 (19%), Positives = 19/81 (23%)
Frame = +3
Query: 684 PTPXXTXGKTXXPPPXGGXSXPXXPPXXTPPXXPPQKTXRGPXGXXXXXXXXXXXXXXXX 863
P P + P P G P PP PP + P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Query: 864 XXXXXXXPPPPXXXXRVXPXP 926
PP P + P P
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXPPKKXP 801
P P P PPP A P PP P K P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +1
Query: 664 KKXXXKPQPPXXPXEKPXXPPPXXAXXPPXXPP-XXPPPEXPPKKXPXXXPGXP 822
+K K PP P P P PP P PPP PP P P
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Frame = +1
Query: 682 PQPPXXPX---EKPXXPPPXXAXXPPXXPPXXPP 774
P PP P P PPP A P PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Frame = +1
Query: 682 PQPPXXPXEKPXXPPPXXAXXPPXXPP----XXPPPEXPP 789
P P P P P PP PP PPP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = +1
Query: 706 EKPXXPPPXXAXXPPXXPPXXPPP--EXPPKK 795
+ P PP P PP PPP PP+K
Sbjct: 209 QDPMEPPKFRHKKVPRGPPSPPPPVLHSPPRK 240
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.9
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = -1
Query: 761 GGXXGGXXAXXGGGXXGFSXGXXGGWGXXXXFXPXFFXGFXGVXGPRW 618
GG GG GGG GF G GG+G F G G GP W
Sbjct: 231 GGFEGGPGGF-GGGPGGFG-GGLGGFGGGPG---GFGGGPGGHGGPGW 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.143 0.488
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,005
Number of Sequences: 5004
Number of extensions: 12915
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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