Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C13
         (962 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.64 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   3.4  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   7.9  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 22/77 (28%), Positives = 22/77 (28%), Gaps = 11/77 (14%)
 Frame = +1

Query: 625 GPXTPXKPXKNXGKKXXXKPQ---PPXXPXEKPXXP--------PPXXAXXPPXXPPXXP 771
           GP  P  P    G      PQ   PP      P  P        P      P   PP  P
Sbjct: 526 GPLGPPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAP 585

Query: 772 PPEXPPKKXPXXXPGXP 822
           PP  P    P    G P
Sbjct: 586 PPPPPMGPPPSPLAGGP 602



 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +1

Query: 688 PPXXPXEKPXXPPPXXAXXPPXXPPXXPPPEXP 786
           PP  P   P  PPP      P   P    P  P
Sbjct: 582 PPAPPPPPPMGPPPSPLAGGPLGGPAGSRPPLP 614



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 745 PPXXPPXXPPPEXPPKKXPXXXPGXP 822
           PP  PP  PP   PP        G P
Sbjct: 581 PPPAPPPPPPMGPPPSPLAGGPLGGP 606


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/75 (22%), Positives = 22/75 (29%)
 Frame = +1

Query: 562 PWXXXXXXXDPGXXXGXXXQRGPXTPXKPXKNXGKKXXXKPQPPXXPXEKPXXPPPXXAX 741
           P+       +PG   G    R P     P +         P+P     + P  P P    
Sbjct: 173 PFAMDPARPNPGMPPGPQMMRPPGNVGPP-RTGTPTQPQPPRPGGMYPQPPGVPMPMRPQ 231

Query: 742 XPPXXPPXXPPPEXP 786
            PP   P   P   P
Sbjct: 232 MPPGAVPGMQPGMQP 246



 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +1

Query: 709 KPXXPPPXXAXXPPXXPPXXPPPEXPPKKXPXXXPG 816
           +P  P P      P   P    P+ PP   P   PG
Sbjct: 208 QPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPG 243


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 16/65 (24%), Positives = 17/65 (26%)
 Frame = +3

Query: 579 GGXGPRXGXGXXXPAGAXNPXKTXKKXGXKXXXXAPTPXXTXGKTXXPPPXGGXSXPXXP 758
           G  GP+ G G     G           G       P P    G    P P G    P  P
Sbjct: 441 GQMGPKGGQGVPGRPGPEGMPGDKGDKGESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQP 500

Query: 759 PXXTP 773
               P
Sbjct: 501 GYGIP 505


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.313    0.143    0.488 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,925
Number of Sequences: 2352
Number of extensions: 4494
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105843456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)