Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C11
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical... 255 3e-68
AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical ... 87 2e-17
AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical... 65 5e-11
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 45 8e-05
U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical pr... 31 0.79
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 29 4.2
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 29 4.2
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical pr... 28 7.4
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81081-4|CAB03092.2| 491|Caenorhabditis elegans Hypothetical pr... 28 9.7
AL023825-1|CAA19442.2| 491|Caenorhabditis elegans Hypothetical ... 28 9.7
AF052060-1|AAC06226.1| 491|Caenorhabditis elegans Olf-1/EBF tra... 28 9.7
>AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical
protein K07H8.3 protein.
Length = 182
Score = 255 bits (624), Expect = 3e-68
Identities = 116/161 (72%), Positives = 137/161 (85%)
Frame = +3
Query: 294 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 473
MNIRCAR DLM+MQ+ NL+CLPENYQMKYYFYH LSWPQLSY+AED KG++VGYVLAKM
Sbjct: 1 MNIRCARVDDLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKM 60
Query: 474 EEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALN 653
EED + HGHITSLAVKRS+RRLGLA K+M+Q + AMVE + AKYVSLHVR SNRAALN
Sbjct: 61 EEDPGEEPHGHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALN 120
Query: 654 LYTNSLGFKILEIEPKYYADGEDAYSMMRDLSAFAVDNKTD 776
LY N+L F+I++ EPKYYADGEDAY+M RDL+ +A + +
Sbjct: 121 LYKNTLKFEIVDTEPKYYADGEDAYAMRRDLAKWAEERNIE 161
>AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical
protein Y97E10AL.3 protein.
Length = 173
Score = 87.0 bits (206), Expect = 2e-17
Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Frame = +3
Query: 312 RPSDLMNM---QHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEED 482
RP D+M+M + NL E Y ++Y ++ +++P+ VAE G I+ YV+ K+E
Sbjct: 5 RPFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGKIE-- 62
Query: 483 GED-NRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 659
G D N HGH+T+L+V + RRLGLA +M E +A +V L VR SN+ A+ LY
Sbjct: 63 GRDTNWHGHVTALSVAPNFRRLGLAAYMMEFLERTS-EARRAYFVDLFVRVSNKIAIELY 121
Query: 660 TNSLGFKILEIEPKYYAD--GEDAYSMMRDLS 749
LG+ + YY EDA+ M + LS
Sbjct: 122 -KKLGYVVYRQIIGYYTGDRDEDAFDMRKSLS 152
>AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical
protein B0238.10 protein.
Length = 278
Score = 65.3 bits (152), Expect = 5e-11
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +3
Query: 357 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHI-VGYVLAKMEEDGEDNRHGHITSLAVKRS 533
L E Y + Y Y +WP+ ++A D+ + +G VL K+E D G++ LAV S
Sbjct: 117 LSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVLCKLELDMYGRCKGYLAMLAVDES 176
Query: 534 HRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYAD 713
RRLG+ +L+ +A AM + + L SN+ A LY+N LGF + KYY +
Sbjct: 177 CRRLGIGTRLVRRALDAM-QSKGCDEIVLETEVSNKNAQRLYSN-LGFIRQKRLLKYYLN 234
Query: 714 GEDAYSM 734
G DA+ +
Sbjct: 235 GGDAFRL 241
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 492 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLYTN 665
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 94 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY-K 152
Query: 666 SLGFKILEIEPKYYADGE 719
GF+ P+YY GE
Sbjct: 153 MHGFEFHASLPEYYRIGE 170
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 492 NRH-GHITSLAVKRSHRRLGLAQKLMNQASLAMVE-CFQAKYVSLHVRKSNRAALNLYTN 665
N H +I S+AV + RRLGLA +L+N ++ + + V LHV +N AAL+ Y
Sbjct: 121 NAHVAYILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFY-K 179
Query: 666 SLGFKILEIEPKYYADGE 719
GF+ P+YY GE
Sbjct: 180 MHGFEFHASLPEYYRIGE 197
>U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical
protein F54E7.9 protein.
Length = 167
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 459 VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSN 638
++A E+ E R +I S V HR GL LM+ + + + LHV+ SN
Sbjct: 71 IVAVKPENFETGRVLYIRSFGVHPRHREAGLGSFLMDFVD-EKGKLLKLPHAMLHVQTSN 129
Query: 639 RAALNLYTNSLGFKILEIEPKYY--ADGEDAYSMMR 740
+ A+ Y N GF + + P+YY DA+ M +
Sbjct: 130 KTAIEFYKNR-GFNVDCLVPQYYQRCSPPDAFIMRK 164
>U23524-5|AAC46821.2| 252|Caenorhabditis elegans Hypothetical
protein C29F5.2 protein.
Length = 252
Score = 31.5 bits (68), Expect = 0.79
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 324 LMNMQHCNLLCLPENYQMKYYFYHGLS 404
++++QHC L C NY +Y + GLS
Sbjct: 119 IVDLQHCTLPCKSINYNFHFYSFKGLS 145
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 441 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 566
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 441 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 566
GH IV Y+L K + NRHGH T L + ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 801 ISKYLSHCCQFYYQLQKHS 745
ISK L+HC QF Y + HS
Sbjct: 549 ISKLLNHCHQFVYDVNSHS 567
>Z92812-6|CAB07280.1| 372|Caenorhabditis elegans Hypothetical
protein T03E6.6 protein.
Length = 372
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 207 VLEQIEIWINSTSKQC-TNFKI*LIGEV 127
+L+Q E W NST +C T F I LI EV
Sbjct: 109 ILQQNECWQNSTYLKCLTTFTINLIAEV 136
>Z81070-4|CAB03003.2| 474|Caenorhabditis elegans Hypothetical
protein F26E4.5 protein.
Length = 474
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 256 GCLTSDAGGVSDIPPSSSRTNRNLDKQHFQTMYQLQNLINW 134
G TS + V + P+ ++N +L K H +L+ + NW
Sbjct: 38 GASTSLSKSVEESAPNKDKSNSSLVKSHHVLKIKLKKITNW 78
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 345 NLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLA 521
NL+ + E Y+ +YY G + L + G+IVGY + ++ ++ +GH+ S A
Sbjct: 432 NLVPIRELYKDRYYVVAGNDYQYLIDDGYNITGNIVGYTV-DCKDSKDEFVYGHLPSYA 489
>Z81081-4|CAB03092.2| 491|Caenorhabditis elegans Hypothetical
protein Y16B4A.1 protein.
Length = 491
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 503
P N + +F+ ++ + + S E E+ G+V + E DG+D R+G
Sbjct: 62 PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110
>AL023825-1|CAA19442.2| 491|Caenorhabditis elegans Hypothetical
protein Y16B4A.1 protein.
Length = 491
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 503
P N + +F+ ++ + + S E E+ G+V + E DG+D R+G
Sbjct: 62 PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110
>AF052060-1|AAC06226.1| 491|Caenorhabditis elegans Olf-1/EBF
transcription factor protein.
Length = 491
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 503
P N + +F+ ++ + + S E E+ G+V + E DG+D R+G
Sbjct: 62 PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,320
Number of Sequences: 27780
Number of extensions: 361427
Number of successful extensions: 854
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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