Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C10
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    42   1e-04
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    28   2.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   3.6  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    27   3.6  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    26   8.2  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   8.2  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +2

Query: 206 AEFIGNLLLNLFGCGACVKISLESNSETDXXXXXXXXXXXXXXXXXXIGHISGGHLNPAV 385
           AEF+G L+L +FG G+ ++ ++ + +                      G ISGGH+NPAV
Sbjct: 315 AEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGGHVNPAV 374

Query: 386 TAGMLCTGRIKLIRAVLYVIVQ 451
           T  +    +    +  +Y+  Q
Sbjct: 375 TISLAIFRKFPWYKVPIYIFFQ 396


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 122 KVIMGELGTKLGLDELTGGAATISRALLAEFIGNLLLNLFGCG-ACVKISLES 277
           +V+M  LG K G  EL  G   ++RA  A    N+L +    G   +K S ES
Sbjct: 38  QVVMAGLGLKTGYQELYSGVENLTRADQASRCFNILQHHMSSGIQLLKDSAES 90


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
 Frame = -2

Query: 199 CSADRSGSSGQLVQSQFSTKLTHYDFLN----------RFVKQKNKLILLSQALYCLYNN 50
           C+ D   SS +     FS  + H DF N           F+   N   +L + L C Y+N
Sbjct: 357 CNPDLYDSSDECYILTFSLMILHTDFFNIHNRQKMTRAEFISNTNLPTILPEILECFYDN 416

Query: 49  V 47
           +
Sbjct: 417 I 417


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 661 HRPHCDPXSLARRRLXXLC-HEPSPLLWLGPXC 756
           H P   P S  + R+  +  H P   LWL P C
Sbjct: 703 HSPRVPPVSEFKERIDAIVKHVPKDHLWLNPDC 735


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 212 FIGNLLLNLFGCG 250
           F+GNL+LNL+ CG
Sbjct: 47  FLGNLVLNLWDCG 59


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 92  FIFLFNESIQKVIMGELGTKLGLDELTGGAATISRALLAEF 214
           F+ L N+SI  V  G+L TK+   +L+      SR+LL +F
Sbjct: 689 FVVLDNKSIIHVYAGDLTTKIPSAQLS--IDNTSRSLLGDF 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,247
Number of Sequences: 5004
Number of extensions: 38775
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)