Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C09
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 108 9e-25
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 5e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 31 0.22
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 31 0.22
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 0.88
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.7
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 2.7
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 3.6
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 6.2
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 6.2
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 6.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 8.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 8.2
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 108 bits (260), Expect = 9e-25
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 4/229 (1%)
Frame = +3
Query: 177 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQ-EENAKTENSEDETELDIAIIRQVEYYF 353
+ +V +E+ +V+ K T +E ET + E++ K + S DE E +++QVE+YF
Sbjct: 20 SSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAE----VLKQVEFYF 75
Query: 354 GDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSED 533
D NL DKFL + +DGWVP++ + F R+ + + + I NAL KS LLEV E
Sbjct: 76 SDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEA 133
Query: 534 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRY 713
+KVRR PL ++ K + RS+Y KGF D D + K F+E I
Sbjct: 134 GEKVRR--MIPLVRVD---NKSVMERSVYCKGFG-DEKDDTQIALEKFFEENAGPISAVR 187
Query: 714 VEKSTKKRLFKGSVFATFKTREQXEKFM---NAKGHKYGDNDLLXSGRK 851
+ + K+ FKGSVF FK + KF+ K+G+++L +K
Sbjct: 188 MRRDDDKK-FKGSVFVEFKEPDVANKFLEKVKTAPLKWGEDELTIMSKK 235
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +3
Query: 336 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 515
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 516 LEVSED 533
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 264 NGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 410
NG + + E E+E + + + ++ N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 31.1 bits (67), Expect = 0.22
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Frame = +3
Query: 474 DVIANALNKSTSGLLEVSEDNKKVRRNPEQPL------PEMNEELRKEIC--NRS---IY 620
D+ AL+ +T E E++K N Q E NE+ +E NR ++
Sbjct: 107 DIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMF 166
Query: 621 AKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQXEKFMN 800
G + + D L +YF+QF EV + + R ST R +G F TFK + + M+
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMR---DSTTGR-SRGFGFLTFKNPKCVNEVMS 222
Query: 801 AKGHKYGDNDLLXSGRKILSAEQK 872
+ H D ++ R I EQ+
Sbjct: 223 KEHHL--DGKIIDPKRAIPREEQE 244
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 0.88
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Frame = +3
Query: 351 FGDVNLHRDKFLQEQIKLDDGWVPL--EILTKFNRLAKLTE----DTDVIANALNKSTSG 512
+ +N + KFL + K + L E+ TK +++L E D + L+ ++
Sbjct: 235 YSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTA 294
Query: 513 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQE 686
LL S++ + +R ++ N + I + AS D L+NYF+QF E
Sbjct: 295 LLIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +3
Query: 291 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTED 470
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 471 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDA 644
+ V + T LL+++ D+ R + +NE E+ K+ N S+ K
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIR 139
Query: 645 SLD 653
LD
Sbjct: 140 KLD 142
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 657 LLNYFKQFQEVENVI-MRRYVEKSTKKRLFKGSVFATFKTREQXEKFM 797
LLN+FK+++ VE + + R + + K F VF TF+++ + E M
Sbjct: 161 LLNFFKKYRSVERIASLSRSISEFQKS--FYEQVFDTFQSQFKKESGM 206
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.6
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Frame = +3
Query: 192 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETEL-DIAIIRQVEYYFGDVNL 368
S +E+ + +PE + T + T E +EE + E E+E E+ + ++E GD++L
Sbjct: 331 SEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSL 390
Query: 369 H---RDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVI 482
F+ E ++ + + E + L K +E T+++
Sbjct: 391 SLGVASSFVDEMLR-ERNNLSAEGTSASPSLDKKSESTNIV 430
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 420 PLEILTKFNRLAKLTEDTDVIANALNKSTSGL---LEVSEDNKKVR 548
P+ I TK R A + + +A LN+ TSG+ L + N+ VR
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQNRTVR 662
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 534 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 650
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 6.2
Identities = 27/117 (23%), Positives = 47/117 (40%)
Frame = +3
Query: 243 KEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVP 422
K + +N + K+E ++ E L ++ E V+L + Q KLD +
Sbjct: 607 KNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDEESKAVSQRKLD---LE 663
Query: 423 LEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELR 593
+I +LA TE+ + L L ++ + K V E P PE++ R
Sbjct: 664 YKINNSKTQLATATEEYHEHSKQLEAEKQELSKLEDGLKSVNLTEEAPKPEVDSTPR 720
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 618 YAKGFAKDASLD-DLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTRE 779
Y K K+ + D + L+YF++F + V +R Y ++ K F+ ++F + E
Sbjct: 983 YTKKNPKEPTADVNSLSYFEKFFVLFVVNLRHYFQERMKALKFRSTLFGDLEILE 1037
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 231 MTEDKEVTVETNGQEENAKTENSEDE 308
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 409 SSNFICSCRNLSRC 368
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,797
Number of Sequences: 5004
Number of extensions: 70688
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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