Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C08
(954 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.97
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.97
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.2
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 3.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.1
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 6.8
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.1 bits (62), Expect = 0.97
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = -2
Query: 770 KXPPGGXPPPXXGGPXFFKXXXGGGXPXEKXPPTXPFXGXGPXGXPGXKKXXPGEPP 600
+ P G PP G F G P PPT P+ P P +PP
Sbjct: 560 RKPYRGGPPIHHGERHFDSGNDWHGNPSTVPPPTNPYNPGYPYMDPNYSSGYVSQPP 616
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.97
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 952 PPPAXGXTPPPXGXKKXXPPPPPXXG 875
P PA PPP PPPPP G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 952 PPPAXGXTPPPXGXKKXXPPPPP 884
PPP PPP G PPPPP
Sbjct: 761 PPPP----PPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 809 GGPPXXXPPXGVXXXXXFPXFXPPXGXGGGXXLLXPPRGGGXP 937
GGPP PP GV P PP G P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Frame = -2
Query: 953 PTPXXGXNP-PPXGXXEEXPPPPXPXGGKXG 864
PTP P PP PPPP P G G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 458 PPPPXGGGXXFLGPXPXXPP 517
PPPP G GP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 929 PPPXGXXEEXPPPPXP 882
PPP G PPPP P
Sbjct: 765 PPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = -3
Query: 952 PPP---AXGXTPPPXGXKKXXPPPPPXXGXKXGK 860
PPP A G P P + PPPPP G+
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Score = 27.1 bits (57), Expect = 3.9
Identities = 27/115 (23%), Positives = 28/115 (24%)
Frame = -2
Query: 947 PXXGXNPPPXGXXEEXPPPPXPXGGKXGEXXFXXXXPGGXXKXGXXRGGXPGGXTPGXFK 768
P G PPP PP P G P R P TP
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGR-----SAPALPPLGNASRTSTPPVPTPP--S 422
Query: 767 XPPGGXPPPXXGGPXFFKXXXGGGXPXEKXPPTXPFXGXGPXGXPGXKKXXPGEP 603
PP P P P PP+ P P G P P P
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPP---LPPSAPIAPPLPAGMPAAPPLPPAAP 474
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -2
Query: 899 PPPPXPXGGKX-GEXXFXXXXPGGXXKXGXXRGGXPGG 789
PPPP GG G F PGG GG PGG
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG-PGG 112
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -3
Query: 952 PPPAXGXTPPPXGXKKXX-PPPPPXXG 875
PP PPP G + PPPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 803 PPGGPPXXXPPXGVXXXXXFPXFXPP 880
PPG PP PP G P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 806 GGXPGGXTPGXFKXPPGGXPPPXXGGP 726
GG PGG G PGG P GP
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNGP 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,709
Number of Sequences: 5004
Number of extensions: 37576
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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