Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C07
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   9e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.50 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.9  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect(2) = 9e-04
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +2

Query: 590  PAXXPXPXXGPXAXXFXIXSXPLPXPPKIXPPXXPVAKPGXXLPTIP 730
            P     P   P      I S P   PPK  PP  P++KP    P  P
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAP 1007



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 602  PXPXXGPXAXXFXIXSXPLPXPPKIXPPXXPVAKPGXXLPTIP 730
            P P   P      + + P+P P    P   PV KP   +P +P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIP---PVPKPAAGVPPVP 1192



 Score = 26.2 bits (55), Expect(2) = 9e-04
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 848  PPXPLPXXGXPGSXXXVPPXSPXXGPXXPRTPPP 949
            PP P+P    P       P  P      P  PPP
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 859 PPPXGXPRFXXXXPSPLPXPXPXXPPNPPP 948
           PPP   PR       PLP      PP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +2

Query: 827 LXXPGXXPPXPLPXXGXPGSXXXVPPXSPXXGPXXPRTPPP 949
           L   G   P P P    P +    PP S       P  PPP
Sbjct: 353 LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 608 PXXGPXAXXFXIXSXPLPXPPKIXPPXXPVAKPGXXLPTIPXXFP 742
           P   P        + P+P PP + PP  P + P    P++P   P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSL-PPSAPPSLPPSAPPSLPMGAP 444



 Score = 26.6 bits (56), Expect(2) = 0.50
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 836 PGXXPPXPLPXXGXPGSXXXVPPXSPXXGPXXPRTPP 946
           P    P  LP    P      PP  P   P  P  PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
 Frame = +1

Query: 850 PLXPPPXGXPRFXXXXPSPLPXP---XPXXPPNPPP 948
           P   PP   P      P P+P P       PPN PP
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 848 PPXPLPXXGXPGSXXXVPPXSPXXGPXXPRTPPP 949
           PP P P    P +   +PP +P   P      PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448



 Score = 21.8 bits (44), Expect(2) = 0.50
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 680 PPXXPVAKPGXXLPTIP 730
           PP  P A PG   P +P
Sbjct: 388 PPAPPPAIPGRSAPALP 404


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 944 GGFGGXXGXGLGXGEGXXXXNLGXPXGG 861
           GGFGG  G G G G G      G P  G
Sbjct: 460 GGFGGRGGFGGGRGRGRGGARSGNPNRG 487


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = +1

Query: 850 PLXPPPXGXPRFXXXXPSPLPXPXP--XXPPNPPP 948
           P  PPP          P P+P P P    PP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +2

Query: 836 PGXXP-PXPLPXXGXPGSXXXVPPXSPXXGPXXPRTPPP 949
           P   P P P P  G P      PP     GP  P  PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPP-PPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
 Frame = +1

Query: 853 LXPPPXGXPRFXXXXPSPLPXPXPXXPP---NPPP 948
           L  PP   P      P+P P P P   P    PPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +2

Query: 848 PPXPLPXXGXPG-SXXXVPPXSPXXGPXXPRTPPP 949
           PP P      P  +   VPP +P  G   P  PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 865 PXGXPRFXXXXPSPLPXPXPXXPPNPPP 948
           P   P +      PLP P P  PP  PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 862 PPXGXPRFXXXXPSPLPXPXPXXPP 936
           PP   P+     P+P P P P  PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
 Frame = +2

Query: 836 PGXXPPXP--LPXXGXPGSXXXVPPXSP----XXGPXXPRTPPP 949
           P   PP P  LP    P +    PP +P       P  P+ PPP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 947 GGGFGGXXGXGLGXGEGXXXXNLGXPXG 864
           G GFGG  G G G G      N+G P G
Sbjct: 86  GAGFGGFPGAGPG-GARTFHFNMGGPGG 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,839
Number of Sequences: 5004
Number of extensions: 21888
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)