Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C06
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.10 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.42 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = -2

Query: 834 GXAXXGGXPGGXG---GGFXGXXXGLGXXPXXGXTPXW 730
           G    GG PGG G   GGF G   G G  P     P W
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
 Frame = -2

Query: 942 GGGPXXGGXRANPGGFXXXXXXXXXXXXXXXXXXAXGX-AXXGGXPGGXGGGFXGXXXGL 766
           G G   GG    PGGF                    G      G PGG GGG  G   GL
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251

Query: 765 G 763
           G
Sbjct: 252 G 252


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = +3

Query: 780 PPXNPPPXPP---XTPPXXPXXXXPP 848
           PP NPPP PP     PP  P    PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 877  PXPPPXKXPXVXSXPPXXGPPPSXGXVP 960
            P PPP   P   S PP    PPS    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +3

Query: 765  PTXGXPPXNPPPXPPXTP-PXXPXXXXPP 848
            PT   PP + PP P   P P  P    PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 735 RVXTPXXGXXPTXGXPPXNPPPXPPXTPPXXP 830
           R  TP     P+   PP  PP  PP  PP  P
Sbjct: 411 RTSTPPVPTPPSL--PPSAPPSLPPSAPPSLP 440



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +3

Query: 747 PXXGXXPTXGXPPX-NPPPXPPXTPPXXPXXXXP 845
           P  G       PP   PP  PP  PP  P    P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 729 PXRVXTPXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPP 848
           P     P     P  G PP  PPP PP      P    PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.146    0.509 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,195
Number of Sequences: 5004
Number of extensions: 16102
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)