Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C06
(961 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.043
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.043
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.043
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.53
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.53
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.53
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.53
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 32 0.53
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.53
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 1.2
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 31 1.6
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 2.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.1
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 2.1
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 2.1
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 2.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.7
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 3.7
U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical pr... 29 3.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.7
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 3.7
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 3.7
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 3.7
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 3.7
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 4.9
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 4.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.9
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 29 4.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 25 5.3
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 29 6.5
L23648-9|AAK95877.1| 466|Caenorhabditis elegans Prion-like-(q/n... 29 6.5
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 29 6.5
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 8.6
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 28 8.6
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 8.6
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 8.6
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.9 bits (79), Expect = 0.043
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Frame = +3
Query: 765 PTXGXPPX----NPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXTP-XG 929
P G PP +PPP P +PP P PP P G L P G
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 318
Query: 930 XAPPLKXXGS 959
+PP GS
Sbjct: 319 GSPPPAGTGS 328
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 746 PXXGXXPNPXXSPXKPPPXPPGXPPXXAXP 835
P G P P PPP P G PP + P
Sbjct: 284 PAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.9 bits (79), Expect = 0.043
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Frame = +3
Query: 765 PTXGXPPX----NPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXTP-XG 929
P G PP +PPP P +PP P PP P G L P G
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 339
Query: 930 XAPPLKXXGS 959
+PP GS
Sbjct: 340 GSPPPAGTGS 349
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 746 PXXGXXPNPXXSPXKPPPXPPGXPPXXAXP 835
P G P P PPP P G PP + P
Sbjct: 305 PAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.9 bits (79), Expect = 0.043
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Frame = +3
Query: 765 PTXGXPPX----NPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXTP-XG 929
P G PP +PPP P +PP P PP P G L P G
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 324
Query: 930 XAPPLKXXGS 959
+PP GS
Sbjct: 325 GSPPPAGTGS 334
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 746 PXXGXXPNPXXSPXKPPPXPPGXPPXXAXP 835
P G P P PPP P G PP + P
Sbjct: 290 PAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 319
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Frame = +3
Query: 744 TPXXGXXPTXGXPPXNPPPXPPXT--PPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLX 917
TP P+ G P PPP P T PP P PP P G +
Sbjct: 284 TPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG-MR 342
Query: 918 TPXGXAPP 941
P G PP
Sbjct: 343 YPGGMPPP 350
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +3
Query: 747 PXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXTPX 926
P G P G PP PPP P PP PP P G P
Sbjct: 715 PPPGLPPITGGPP--PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 927 GXAPP 941
PP
Sbjct: 773 PPPPP 777
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 728 PXKGVNPXXGXXPNPXXSPXKPPPXPPGXPP 820
P G+ P G P P P PP PP PP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 747 PXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPP 848
P G P PP PP PP PP PP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 877 PXPPPXKXPXVXSXPPXXGPPP 942
P PPP P + PP PPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPP 765
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 746 PXXGXXPNPXXSPXKPPPXPPGXPPXXAXP 835
P G P P PPP P G PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +3
Query: 747 PXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXTPX 926
P G P G PP PPP P PP PP P G P
Sbjct: 715 PPPGLPPITGGPP--PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Query: 927 GXAPP 941
PP
Sbjct: 773 PPPPP 777
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 728 PXKGVNPXXGXXPNPXXSPXKPPPXPPGXPP 820
P G+ P G P P P PP PP PP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 747 PXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPP 848
P G P PP PP PP PP PP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 877 PXPPPXKXPXVXSXPPXXGPPP 942
P PPP P + PP PPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPP 765
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 746 PXXGXXPNPXXSPXKPPPXPPGXPPXXAXP 835
P G P P PPP P G PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Frame = +3
Query: 744 TPXXGXXPTXGXPPXNPPPXPPXT--PPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLX 917
TP P+ G P PPP P T PP P PP P G +
Sbjct: 294 TPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG-MR 352
Query: 918 TPXGXAPP 941
P G PP
Sbjct: 353 YPGGMPPP 360
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 32.3 bits (70), Expect = 0.53
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -3
Query: 941 GGGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXGGVXGGXPXGWG 762
GGG GG G F GGG G GG GG G GG G G
Sbjct: 58 GGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGGNQGGGG 117
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +3
Query: 747 PXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXTPX 926
P G P G PP PPP P PP PP P G P
Sbjct: 298 PPPGLPPITGGPP--PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Query: 927 GXAPP 941
PP
Sbjct: 356 PPPPP 360
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 728 PXKGVNPXXGXXPNPXXSPXKPPPXPPGXPP 820
P G+ P G P P P PP PP PP
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 747 PXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPP 848
P G P PP PP PP PP PP
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 877 PXPPPXKXPXVXSXPPXXGPPP 942
P PPP P + PP PPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPP 348
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 746 PXXGXXPNPXXSPXKPPPXPPGXPPXXAXP 835
P G P P PPP P G PP P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Frame = -3
Query: 941 GGGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXG-GVXGGXPXGW 765
GGG GG G GG G G GG RGG G G G P G
Sbjct: 92 GGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGS 151
Query: 764 GXPXXWG 744
WG
Sbjct: 152 NGGGDWG 158
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -3
Query: 941 GGGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXGGVXGGXPXGWG 762
GGGP G G GGG G G GG RG GG GG G G
Sbjct: 43 GGGPGGWGNNGGGGWGRGGGRG--GGDWGGNNGGGGNWGGNGGGRGDWGG-NGGGGRGGG 99
Query: 761 XPXXWG 744
WG
Sbjct: 100 GRGDWG 105
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXP 830
PP PPP PP +PP P
Sbjct: 126 PPPRPPPVPPLSPPERP 142
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -3
Query: 950 PLEGGGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXGGVXGGXPX 771
P GGG GG G GGG G G GG GG GG GG
Sbjct: 116 PACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGG 175
Query: 770 G 768
G
Sbjct: 176 G 176
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -3
Query: 941 GGGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXGGVXGG 780
GGG GG G GGG G G GG GG GG GG
Sbjct: 28 GGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGG 81
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 729 PXRVXTPXXGXXPTXGXPPXNPPPXPPXTPPXXPXXXXPPXQ 854
P + P P PP PPP P PP P P Q
Sbjct: 47 PPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQ 88
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 756 GXXPTXGXPPXNPPPXPPXTPPXXPXXXXP 845
G + G PP PPP P PP P P
Sbjct: 20 GGCCSMGPPPCPPPPPPMCAPPPLPCPPPP 49
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 728 PXKGVNPXXGXXPNPXXSPXKPPPXPPGXPP 820
P + P P P P PPP PP PP
Sbjct: 46 PPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 783 PXNPPPXPPXTPPXXPXXXXPP 848
P PPP PP PP P PP
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXPXXXXPP 848
PP PPP PP PP PP
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPPP 24
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 783 PXNPPPXPPXTPPXXPXXXXPP 848
P PPP PP PP P PP
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXPXXXXPP 848
PP PPP PP PP PP
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPPP 24
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -3
Query: 938 GGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXGGVXGGXPXGWGX 759
GGP GG G GGG G GG GG G GG GWG
Sbjct: 204 GGPGGGGQGGYGGGNYGGGWG--QQGGGGQGGWGGPQQQQGG--GGWGQQGGGGQGGWGG 259
Query: 758 P 756
P
Sbjct: 260 P 260
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -3
Query: 938 GGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXGGVXGGXPXGWGX 759
GGP GG G GGG G GG GG G GG GWG
Sbjct: 242 GGPGGGGQGGYGGGNYGGGWG--QQGGGGQGGWGGPQQQQGG--GGWGQQGGGGQGGWGG 297
Query: 758 P 756
P
Sbjct: 298 P 298
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.7
Identities = 34/127 (26%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Frame = +1
Query: 277 NPKKHG-GGKXAXXGKKXRPXAKXXPXXPSKKPLXP--PXXAXKAXXXXXGXXXXXGXXX 447
NP G GG GK +P A P P K P P G G
Sbjct: 103 NPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-PA 161
Query: 448 GXPATXRKXXXXXWGXPGXVFGXXIRXPXXXXGXXGXQAXQXGSPGXPXGXXXPXKXXGX 627
G P G PG G P G G A G+PG P G P
Sbjct: 162 GPPGPPGPD-----GNPGSPAGPSGPGPAGPPGPAG-PAGNDGAPGAPGGPGEPGASEQG 215
Query: 628 PXXKKGP 648
+ GP
Sbjct: 216 GPGEPGP 222
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 3.7
Identities = 34/127 (26%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Frame = +1
Query: 277 NPKKHG-GGKXAXXGKKXRPXAKXXPXXPSKKPLXP--PXXAXKAXXXXXGXXXXXGXXX 447
NP G GG GK +P A P P K P P G G
Sbjct: 103 NPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-PA 161
Query: 448 GXPATXRKXXXXXWGXPGXVFGXXIRXPXXXXGXXGXQAXQXGSPGXPXGXXXPXKXXGX 627
G P G PG G P G G A G+PG P G P
Sbjct: 162 GPPGPPGPD-----GNPGSPAGPSGPGPAGPPGPAG-PAGNDGAPGAPGGPGEPGASEQG 215
Query: 628 PXXKKGP 648
+ GP
Sbjct: 216 GPGEPGP 222
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 834 GXAXXGGXPGGXGGGFXGXXXGLG-XXPXXGXTP 736
G GG GG GGGF G G G P G P
Sbjct: 481 GGGGGGGGFGGGGGGFGGGGGGFGSGSPFGGAAP 514
>U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical
protein F12A10.1 protein.
Length = 120
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 819 GGXPGGXGGGFXGXXXGLG 763
GG PGG GGG+ G G G
Sbjct: 61 GGYPGGYGGGYPGGYSGYG 79
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 3.7
Identities = 34/127 (26%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Frame = +1
Query: 277 NPKKHG-GGKXAXXGKKXRPXAKXXPXXPSKKPLXP--PXXAXKAXXXXXGXXXXXGXXX 447
NP G GG GK +P A P P K P P G G
Sbjct: 103 NPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-PA 161
Query: 448 GXPATXRKXXXXXWGXPGXVFGXXIRXPXXXXGXXGXQAXQXGSPGXPXGXXXPXKXXGX 627
G P G PG G P G G A G+PG P G P
Sbjct: 162 GPPGPPGPD-----GNPGSPAGPSGPGPAGPPGPAG-PAGNDGAPGAPGGPGEPGASEQG 215
Query: 628 PXXKKGP 648
+ GP
Sbjct: 216 GPGEPGP 222
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.7
Identities = 34/127 (26%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Frame = +1
Query: 277 NPKKHG-GGKXAXXGKKXRPXAKXXPXXPSKKPLXP--PXXAXKAXXXXXGXXXXXGXXX 447
NP G GG GK +P A P P K P P G G
Sbjct: 103 NPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAG-PA 161
Query: 448 GXPATXRKXXXXXWGXPGXVFGXXIRXPXXXXGXXGXQAXQXGSPGXPXGXXXPXKXXGX 627
G P G PG G P G G A G+PG P G P
Sbjct: 162 GPPGPPGPD-----GNPGSPAGPSGPGPAGPPGPAG-PAGNDGAPGAPGGPGEPGASEQG 215
Query: 628 PXXKKGP 648
+ GP
Sbjct: 216 GPGEPGP 222
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 728 PXKGVNPXXGXXPNPXXSPXKPPPXPPGXPP 820
P +G G P +P KPP P G PP
Sbjct: 627 PPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXPXXXXPP 848
PP PPP P PP P PP
Sbjct: 73 PPLPPPPLPLSNPPAKPTPPPPP 95
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXPXXXXPP 848
PP PPP P PP P PP
Sbjct: 295 PPLPPPPLPLSNPPAKPTPPPPP 317
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 728 PXKGVNPXXGXXPNPXXSPXKPPPXPPGXPP 820
P +G G P +P KPP P G PP
Sbjct: 627 PPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXP 830
PP PPP PP PP P
Sbjct: 354 PPAPPPPPPPPPPPPPP 370
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXP 830
PP PPP PP PP P
Sbjct: 357 PPPPPPPPPPPPPPQTP 373
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 818 GGXRGGXGGVXGGXPXGWGXPXXWG 744
GG GG GG G GWG P WG
Sbjct: 252 GGRGGGWGGWGRGSRWGWGRP-SWG 275
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Frame = -3
Query: 944 EGGGPXXGGXEX-TXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGX-------GGV 789
+GGG GG + G + G G GG RGG GG
Sbjct: 194 QGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGG 253
Query: 788 XGGXPXGWGXPXXWG 744
GG GWG WG
Sbjct: 254 RGGGWGGWGRGSRWG 268
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 765 PTXGXPPXNPPPXPPXTPPXXPXXXXPP 848
P PP PPP PP PP P PP
Sbjct: 127 PYQQQPP--PPPPPPHYPPPPPHYPPPP 152
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +3
Query: 780 PPXNPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXTPXGXAPP 941
PP PPP PP + P PP P L +P PP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPP 1391
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/88 (26%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Frame = +2
Query: 359 PPRNPXXPXXXRXRXXXGXGGXXXGXG----PGXGXRPPPXRXXLXVGXARAXFSGXQSG 526
PP NP P + G G G PG P P G + A + + G
Sbjct: 135 PPCNPCPPGPPGPQGPTGNSGQPGRPGNPGRPGSPGTPGPVGPNGASGDSGAPGNDGEKG 194
Query: 527 AXGXXXXPXXXRPXXXGXPGXRGAXXFP 610
G P G PG GA P
Sbjct: 195 EPGRPAQSTPSTPGEPGNPGDAGATGAP 222
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.0 bits (52), Expect(2) = 5.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 783 PXNPPPXPPXTPP 821
P PPP PP PP
Sbjct: 573 PGGPPPPPPPPPP 585
Score = 22.2 bits (45), Expect(2) = 5.3
Identities = 9/27 (33%), Positives = 9/27 (33%)
Frame = +3
Query: 729 PXRVXTPXXGXXPTXGXPPXNPPPXPP 809
P P P G PPP PP
Sbjct: 530 PLSTGAPTPPPPPPVGMANGGPPPPPP 556
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 792 PPPXPPXTPPXXPXXXXPP 848
PPP PP PP P PP
Sbjct: 483 PPPSPPALPPALPNPNEPP 501
>L23648-9|AAK95877.1| 466|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 38
protein.
Length = 466
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 756 GXXPTXGXPPXNPPPXPPXTPPXXPXXXXPP 848
G P G PP P PP P P PP
Sbjct: 93 GYPPMHGMPPGMPQGMPPMMDPNMPDFSSPP 123
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 746 PXXGXXPNPXXSPXKPPPXPPGXP 817
P G P P P PP PPG P
Sbjct: 397 PSPGQYPGPMHYPGMPPMMPPGAP 420
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 877 PXPPPXKXPXVXSXPPXXGPPPSXG 951
P PPP P PP PPP G
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPPPGG 818
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 877 PXPPPXKXPXVXSXPPXXGPPPSXG 951
P PPP P PP PPP G
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPPPGG 818
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Frame = +3
Query: 744 TPXXGXXP-TXGXPPXNPPPXPPXTPPXXPXXXXPPXQXXXXXXXXXXXXXKXPXGXLXT 920
TP P T PP + P P PP P P Q P G +
Sbjct: 688 TPSDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYPGYPGY---GPPGAMRP 744
Query: 921 PXGXAPP 941
P G APP
Sbjct: 745 PAGFAPP 751
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 780 PPXNPPPXPPXTPP 821
PP +PPP PP PP
Sbjct: 136 PPPSPPPPPPPPPP 149
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = -3
Query: 941 GGGPXXGGXEXTXGXFXGGGXGFXXXXXXXXXXXXXXXXGXGGXRGGXGGVXGG 780
GGG GG + G + GGG G G GG GG G GG
Sbjct: 218 GGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGG 271
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 743 NPXXGXXPNPXXSPXKPPPXPPGXPPXXAXP 835
NP P P +P PPP PP PP P
Sbjct: 127 NPPRTCCPPP--TPAAPPPPPPPPPPAPEAP 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.146 0.509
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,608,497
Number of Sequences: 27780
Number of extensions: 196976
Number of successful extensions: 2438
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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