Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C06
         (961 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.027

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 0.027
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 746 PXXGXXPNPXXSPXKPPPXPPGXPP 820
           P  G  PNP   P  PP  PPG PP
Sbjct: 34  PQRGSPPNPSQGP--PPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.77
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 765 PTXGXPPXNPPPXPPXTPP 821
           P+ G PP  PP  PP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 765 PTXGXPPXNPPPXPPXTPPXXPXXXXP 845
           P  G PP      PP  PP  P    P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 729 PXRVXTPXXGXXPTXGXPPXNPPPXPP 809
           P R   P     P  G PP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +3

Query: 780 PPXNPPPXPPXTPPXXPXXXXPPXQ 854
           P    PP P   PP       PP Q
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQ 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.146    0.509 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,159
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)