Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C05
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical pr... 32 0.60
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 5.6
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 5.6
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 28 7.4
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 28 7.4
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 28 7.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 7.4
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 9.8
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 9.8
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 9.8
U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical pr... 28 9.8
AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical ... 28 9.8
>L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical
protein C30A5.3 protein.
Length = 223
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 606 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 728
Y+ R+F +E ALL + +P+TC + E W FL A
Sbjct: 71 YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/73 (35%), Positives = 33/73 (45%)
Frame = +3
Query: 627 PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWGCVHEPPFSP 806
PLEAP A + LP P FS+ + L+A A ++ S P V EP +P
Sbjct: 302 PLEAP--APVENAPNLPT--PTFSVDD----LMAQAARDALNSNSIVPDAPKVEEPEPAP 353
Query: 807 TAAPYPVLSSXVT 845
T AP P VT
Sbjct: 354 TPAPAPAEDPVVT 366
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/73 (35%), Positives = 33/73 (45%)
Frame = +3
Query: 627 PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWGCVHEPPFSP 806
PLEAP A + LP P FS+ + L+A A ++ S P V EP +P
Sbjct: 302 PLEAP--APVENAPNLPT--PTFSVDD----LMAQAARDALNSNSIVPDAPKVEEPEPAP 353
Query: 807 TAAPYPVLSSXVT 845
T AP P VT
Sbjct: 354 TPAPAPAEDPVVT 366
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 753 CRSFAPSWGCVHEPPFSPTAAPYP 824
CR F P G H PPF P P P
Sbjct: 423 CRPFPPHHGHHHFPPFWPPCPPPP 446
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 468 VLSCVIXLILWITVLPPLSELIPLAA 391
+LS V+ L+L +LPP S IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 468 VLSCVIXLILWITVLPPLSELIPLAA 391
+LS V+ L+L +LPP S IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 468 VLSCVIXLILWITVLPPLSELIPLAA 391
+LS V+ L+L +LPP S IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302
>U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical
protein ZK813.5 protein.
Length = 471
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 134 VCPNSSMYLIMSGSN*PSVKGDPRPRYQ 51
V P SS+ ++ G N P +K + P YQ
Sbjct: 347 VSPASSVMTVVGGENGPRIKSEASPSYQ 374
>AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical
protein Y24D9A.5 protein.
Length = 282
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 419 GGNTVIHRIRXITQERTCEQKASKRPGTVK 508
GG +V +R + Q+++ ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,580,011
Number of Sequences: 27780
Number of extensions: 394756
Number of successful extensions: 1035
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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