Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C04
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   0.37 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect(2) = 0.37
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 838 PPXGXGXXXXXXXPPPPPP 782
           PP G G       PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 0.37
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 796 PPPPPP 779
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 841 PPPXGXGXXXXXXXPPPPPPP 779
           PPP   G       PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 841 PPPXGXGXXXXXXXPPPPPPP 779
           PPP           PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
           PPP           PP PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 841 PPPXGXGXXXXXXXPPPPPPPXXXXK 764
           PPP           PPPPPPP    K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 843 PPPXXGGGXXXXXXPPXPPPP 781
           PPP    G      PP PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,141
Number of Sequences: 5004
Number of extensions: 32918
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)