Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C04
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.3
07_01_0080 + 587674-588510 31 1.3
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 31 1.7
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.2
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.2
10_08_0115 + 14924463-14924939 30 2.9
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 30 2.9
01_02_0133 - 11457363-11457561,11458239-11458469,11460117-11461108 29 6.7
07_03_1381 - 26166673-26166747,26166972-26167544 28 8.8
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 28 8.8
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 28 8.8
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPP 571
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 841 PPPXGXGXXXXXXXPPPPPPP 779
PPP G PPPPPPP
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPP 671
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 549 PPPPPPSGNKPAFSPPPPPPPP 570
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPP 572
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPP 781
PPP G G PP PPPP
Sbjct: 652 PPPAPGIGNKFPAPPPPPPPP 672
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPP 672
>07_01_0080 + 587674-588510
Length = 278
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 95 PPPPPSSGSPPPPPPPPPPPPP 116
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 96 PPPPSSGSPPPPPPPPPPPPPP 117
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 840 PPXXGGGXXXXXXPPXPPPPP 778
PP GG PP PPPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPP 99
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 97 PPPSSGSPPPPPPPPPPPPPPP 118
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 842 PPPXGXGXXFXXXXPPXPPPP 780
PPP G G PP PPPP
Sbjct: 244 PPPPGQGPVLPRDAPPMPPPP 264
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 841 PPPXGXGXXXXXXXPPPPPPP 779
PPP G G PP PPPP
Sbjct: 244 PPPPGQGPVLPRDAPPMPPPP 264
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 779 GGGGGXGGXXXXXXPPPXXGGG 844
GGGGG GG PPP GG
Sbjct: 79 GGGGGGGGTVMYTSPPPPYSGG 100
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 779 GGGGGXGGXXXXXXPPPXXGGG 844
GGGGG G PPP GGG
Sbjct: 80 GGGGGGGTVMYTSPPPPYSGGG 101
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 841 PPPXGXGXXXXXXXPPPPPPP 779
PPP G PPPPPPP
Sbjct: 94 PPPPPYGVNSSQPPPPPPPPP 114
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 841 PPPXGXGXXXXXXXPPPPPPP 779
PPP G PPPPPPP
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPP 359
>10_08_0115 + 14924463-14924939
Length = 158
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
PPP G PP PPPPP
Sbjct: 91 PPPEDVAGDDMIDAPPPPPPPP 112
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 840 PPXXGGGXXXXXXPPXPPPPP 778
P GGG PP PPPPP
Sbjct: 31 PSCGGGGGGAGPTPPPPPPPP 51
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 843 PPPXXGGGXXXXXXPPXPPPPP 778
P P GGG P PPPPP
Sbjct: 29 PIPSCGGGGGGAGPTPPPPPPP 50
>01_02_0133 - 11457363-11457561,11458239-11458469,11460117-11461108
Length = 473
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 71 SSSIWSH*IFSNLMNLSILIKVFCIQEIRICQD 169
SSSIW + S L L+I I V CI E R D
Sbjct: 360 SSSIWQKLLMSPLSCLAIFIVVICITERRQIAD 392
>07_03_1381 - 26166673-26166747,26166972-26167544
Length = 215
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 841 PPPXGXGXXXXXXXPPPPPP 782
PPP G PPPPPP
Sbjct: 151 PPPCGDANENPPPPPPPPPP 170
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 828 GGGXXXXXXPPXPPPPP 778
GGG PP PPPPP
Sbjct: 93 GGGGWVQLPPPPPPPPP 109
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 828 GGGXXXXXXPPXPPPPP 778
GGG PP PPPPP
Sbjct: 94 GGGWVQLPPPPPPPPPP 110
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 838 PPXGXGXXXXXXXPPPPPPP 779
PP G PPPPPPP
Sbjct: 66 PPAGIAVHPSPPPPPPPPPP 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,812
Number of Sequences: 37544
Number of extensions: 373179
Number of successful extensions: 13469
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8366
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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