Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C04
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   6.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   6.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   6.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 799  PPPPPPP 779
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 799  PPPPPPP 779
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 322 SLLSIYQYSKYNLISSNLISKTDYINH 402
           SL + Y+YS YN  ++N  +  +Y N+
Sbjct: 317 SLSNNYKYSNYNNYNNNYNNYNNYNNN 343


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 322 SLLSIYQYSKYNLISSNLISKTDY 393
           SL + Y+YS YN  ++N  +  +Y
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 322 SLLSIYQYSKYNLISSNLISKTDY 393
           SL + Y+YS YN  ++N  +  +Y
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 322 SLLSIYQYSKYNLISSNLISKTDY 393
           SL + Y+YS YN  ++N  +  +Y
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 322 SLLSIYQYSKYNLISSNLISKTDY 393
           SL + Y+YS YN  ++N  +  +Y
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNY 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,723
Number of Sequences: 438
Number of extensions: 3695
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)