Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C03
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   117   1e-26
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    43   3e-04
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     41   0.001
12_02_1260 - 27395754-27397499                                         29   6.7  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  117 bits (282), Expect = 1e-26
 Identities = 50/63 (79%), Positives = 55/63 (87%)
 Frame = +2

Query: 128 KLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSF 307
           K KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+ARLTEGCSF
Sbjct: 22  KKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSF 81

Query: 308 RRK 316
           RRK
Sbjct: 82  RRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 128 KLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 220
           K KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 22  KKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +2

Query: 128 KLKRLVPHPNSYFMDVKCPGCYKI 199
           K KRLV  PNS+FMDVKC GC+ +
Sbjct: 22  KKKRLVQSPNSFFMDVKCQGCFSM 45


>12_02_1260 - 27395754-27397499
          Length = 581

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 48  LALKLVTMPLAIDLLHPSPCVGEEETVSLSG*CH 149
           L + ++T+  AI  LHP PC     + S  G  H
Sbjct: 112 LGMLVLTLTAAIPSLHPPPCTASSSSSSCQGPTH 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,450
Number of Sequences: 37544
Number of extensions: 264284
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)