Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_C02
(932 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 117 5e-25
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 93 1e-17
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 92 2e-17
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 66 1e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 52 3e-05
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 49 2e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.052
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.090
UniRef50_A6SWU5 Cluster: Uncharacterized conserved protein; n=1;... 36 1.5
UniRef50_A3ZR73 Cluster: Periplasmic glucan biosynthesis protein... 35 2.6
UniRef50_Q1WTG5 Cluster: Putative uncharacterized protein; n=1; ... 35 3.4
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 5.9
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.9
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 117 bits (281), Expect = 5e-25
Identities = 56/66 (84%), Positives = 57/66 (86%)
Frame = +3
Query: 489 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTSRFPLEAPSCALLFRP 668
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDT RFPLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 669 CRLPDT 686
CRLPDT
Sbjct: 62 CRLPDT 67
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 92.7 bits (220), Expect = 1e-17
Identities = 44/54 (81%), Positives = 46/54 (85%)
Frame = +3
Query: 507 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTSRFPLEAPSCALLFRP 668
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDT RFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 91.9 bits (218), Expect = 2e-17
Identities = 45/60 (75%), Positives = 47/60 (78%)
Frame = +3
Query: 513 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTSRFPLEAPSCALLFRPCRLPDTVR 692
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RFPL APSCALLF P LP + R
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLPVSFR 137
Score = 52.8 bits (121), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 320 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 418
R +C G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 66.1 bits (154), Expect = 1e-09
Identities = 40/60 (66%), Positives = 41/60 (68%)
Frame = -2
Query: 562 MLVRGAEPMEKRQQRGLFTVPGLLLAFCSHVLSCVITLILWITVLPPLSELIPLAAAERP 383
MLVRGAEPMEKR + L V LL CS L LILWITVLPPLSEL PLAA ERP
Sbjct: 1 MLVRGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 296 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 454
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 51.6 bits (118), Expect = 3e-05
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +3
Query: 456 ITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTSRFPL 635
I +R + + + P T F S PLT+ITKI Q + +T+ +YK T+ FPL
Sbjct: 44 IMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPL 103
Query: 636 EAPSCALLFRP 668
++PS +LLF P
Sbjct: 104 QSPSYSLLFPP 114
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 48.8 bits (111), Expect = 2e-04
Identities = 26/43 (60%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -2
Query: 706 PKGER-RTVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 581
PKG++ VSGKRQGRNRRAHEGA+ K SL PPLT
Sbjct: 57 PKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 99 DPDMIRYIDEFGQTTTRMQ 155
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.052
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3
Query: 294 SALMNRPTRGERRFAYW 344
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.090
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 366 ERGSGRAPNTQTASPRALADSLMQ 295
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A6SWU5 Cluster: Uncharacterized conserved protein; n=1;
Janthinobacterium sp. Marseille|Rep: Uncharacterized
conserved protein - Janthinobacterium sp. (strain
Marseille) (Minibacterium massiliensis)
Length = 212
Score = 35.9 bits (79), Expect = 1.5
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = -2
Query: 589 PLT*ASIFVMLVRGAEPMEKRQQRGL---FTVPGLLLAFCSHVLSCVITLILWITVLPPL 419
PLT AS+ + L+ P+ + + RGL T+ G ++A +S V L+L T+L PL
Sbjct: 50 PLTVASLIMFLIANLFPIVEIELRGLRSQTTLTGAVMALAGEGMSLVAMLVLATTLLFPL 109
Query: 418 SELIPL 401
+L+ L
Sbjct: 110 LQLLIL 115
>UniRef50_A3ZR73 Cluster: Periplasmic glucan biosynthesis protein,
MdoG; n=1; Blastopirellula marina DSM 3645|Rep:
Periplasmic glucan biosynthesis protein, MdoG -
Blastopirellula marina DSM 3645
Length = 500
Score = 35.1 bits (77), Expect = 2.6
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 537 IGSAPLTSI-TKIDAQV--RGGETRQDYKDTSRFPLEAPSCALLFRPCRLPDTVRLSPF 704
+G AP+TS+ T D Q G E R + D+ E+ + LFRP R PD RLS F
Sbjct: 256 LGVAPITSMWTWGDGQSPPEGQEFRPEVHDSDGLLAESVTGEWLFRPVRNPDATRLSAF 314
>UniRef50_Q1WTG5 Cluster: Putative uncharacterized protein; n=1;
Lactobacillus salivarius subsp. salivarius UCC118|Rep:
Putative uncharacterized protein - Lactobacillus
salivarius subsp. salivarius (strain UCC118)
Length = 189
Score = 34.7 bits (76), Expect = 3.4
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = -1
Query: 734 KGAMRKRHAPEGRKADSIR*AAGSEQESARGSFQGETTGIFIVLSGFATSDLSVDFCDAR 555
+ A +K+H + +K +S ++ SEQ S+ S E+T V S T D S + +
Sbjct: 58 EAAKKKKHKKKKKKKES---SSSSEQSSSVSSSVSESTDSSSVSSSDDTQDTSSNQQNTS 114
Query: 554 QGGGAYGKTPATRPFYGSW 498
QG + PA+ +YG +
Sbjct: 115 QGNTTTYQAPASSYYYGGY 133
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 5.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 177 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 344
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.9
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 257 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 93
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,503,490
Number of Sequences: 1657284
Number of extensions: 14695063
Number of successful extensions: 43701
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43686
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85324527343
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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