Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_C02
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    33   0.43 
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    29   4.0  
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067...    29   5.3  
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656...    29   5.3  
11_04_0414 + 17386806-17387936                                         28   9.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.2  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 522 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTSRFPLEAPSCALLFRPCRLP 680
           CWR  +        T  D Q    +    +KD S  P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 545 RPPDEHHKNRRSSQRWRNPTGL*RYQSFPPGSSLVRSPVPTLPLTGYCPPFSLRERGAF 721
           R P    K ++  ++  + +G  R++S PPG     +PVP  P    C     R R A+
Sbjct: 62  RSPPPPSKKKKKKKKAADESG--RWKSVPPGMRESAAPVPDEPPASPCTTARRRARAAW 118


>06_03_0824 +
           25105450-25105482,25105649-25106485,25106580-25106738,
           25106830-25106886,25106971-25107202,25107338-25107638,
           25107703-25107976,25108051-25108152,25108244-25108525
          Length = 758

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +3

Query: 525 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTSRFPLEAPSCALLFRPCRLP 680
           WR  +        T  D Q    +    +KD S  P + PSC L+F P   P
Sbjct: 622 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 673


>03_02_0225 +
           6565337-6565369,6565564-6565734,6566113-6566400,
           6566495-6566653,6566745-6566801,6566886-6567117,
           6567253-6567553,6567618-6567891,6567966-6568067,
           6568159-6568440
          Length = 632

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +3

Query: 525 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTSRFPLEAPSCALLFRPCRLP 680
           WR  +        T  D Q    +    +KD S  P + PSC L+F P   P
Sbjct: 496 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 547


>11_04_0414 + 17386806-17387936
          Length = 376

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 659 VPTLPLTGYCPPFSLRERGAF 721
           +PTLPL    PPF LR+ G +
Sbjct: 22  IPTLPLETGSPPFPLRQYGGY 42


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,964
Number of Sequences: 37544
Number of extensions: 446609
Number of successful extensions: 1345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)