Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B24
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    29   0.91 
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    29   1.2  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    27   3.7  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    27   4.8  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   6.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   8.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   8.5  

>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 380 EMDIKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEE 499
           E  I+ +++ ++ L+DE LR L   +  C   +NE  +E+
Sbjct: 16  EHSIREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQEK 55


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 491 EEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIEL 628
           EE  Q     S   + K N   +  GDD+ V + D  +YLG I +L
Sbjct: 42  EEPFQKEAGRSYYRSLKKNDVIYRVGDDITVHDGDSSFYLGVICKL 87


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +2

Query: 407 KQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTE-KNNANPFHCGDDVLV 583
           ++L    ELL DL   IT  A K          D  PD   +    NN     C     V
Sbjct: 260 EELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEAC-----V 314

Query: 584 ANKDGRYYLGTIIELS 631
               GRY+ G ++E S
Sbjct: 315 RLMQGRYFDGRVVEAS 330


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/56 (25%), Positives = 32/56 (57%)
 Frame = +2

Query: 380 EMDIKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNN 547
           E +I+  + +  +  +E + D D+       ++ E++EEE +DA P+   +++KN+
Sbjct: 50  EQEIEEALEEDDTNYEEDIID-DEESAQVDEEELEEEEEEEEDATPEPVVTSKKNS 104


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 398 EVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNA 550
           ++ KQL   +  + +L+KT     S   E +    +D   D TTS+ K  +
Sbjct: 211 QIQKQLECYNVRMMELNKTDENNESAICESQASSKEDERSDKTTSSSKKKS 261


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +2

Query: 512 MPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTS---NDNDLCEVGASVARC 682
           +P +TTS+ K    P +  +   +   D  Y   T +E   S   N N+L +VG+S A  
Sbjct: 758 VPTNTTSSVKLPQQPSNEDEKERITTAD--YADSTSLERLESQEPNRNELVQVGSSNAGN 815

Query: 683 LVKFGDGTHSWAPVSSLKLLS 745
               G   H  +PV   K +S
Sbjct: 816 TTSVGMNEHEKSPVKLSKGVS 836


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +2

Query: 437 RDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGT 616
           R L +TIT  +  K +    ++ D   ++TTS  K +    +  +++   N+     L  
Sbjct: 488 RPLSQTITESSVAKTKSTTPKSTDTPTEATTSPVKVSTKNSNTTENLNGINESNMPMLQN 547

Query: 617 IIELSTSNDN 646
            + L TS D+
Sbjct: 548 GLPLRTSGDH 557


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +2

Query: 389 IKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNN 547
           + +E+S Q SLI +   +L+K+I  C+  + +    E+  ++     S+ K++
Sbjct: 135 LNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDD 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,010
Number of Sequences: 5004
Number of extensions: 62722
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)