Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B24
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 32 0.72
01_05_0655 - 23972488-23973152,23973193-23973241,23973883-239739... 31 1.3
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 31 1.7
06_01_0063 - 534138-534605 31 1.7
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 30 2.9
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 3.8
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 29 5.1
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 29 5.1
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 29 5.1
08_02_0614 - 19333231-19334091 28 8.9
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702... 28 8.9
02_02_0247 + 8261735-8261873,8261932-8261975,8262100-8262224,826... 28 8.9
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 31.9 bits (69), Expect = 0.72
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 626 LSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVP 751
L T ++DL +V + R +V +G+G +SW ++ K LS+P
Sbjct: 396 LLTGGEDDLVQVWSMDDRKIVAWGEGHNSWVQLNLPKKLSMP 437
>01_05_0655 -
23972488-23973152,23973193-23973241,23973883-23973940,
23974184-23974215,23975961-23976040,23976509-23977898
Length = 757
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 770 IMCVVCKRREGPATGPATTLSSRATCVAGATR 865
++C V KRR G + GP +T ++ A A A R
Sbjct: 287 VLCAVSKRRRGASEGPKSTTAAAAGAGAAAAR 318
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +2
Query: 635 SNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATG 814
S+ N C + C +SW+ ++ K +PP +D I + R+ T
Sbjct: 548 SHFNLSCYENPGITACQEILERNKNSWSDLNISKSFHLPPLNDENIRKSIFGDRDSSGTS 607
Query: 815 PATTLSS 835
P TLS+
Sbjct: 608 PGDTLST 614
>06_01_0063 - 534138-534605
Length = 155
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 741 SAYRPPMTVASCAWCASDARGLPLDRPQRYHRVRHVWQGLPAKCHSPPVDAW 896
S+ +PP+ VA+CA C D + +R HR RHV+ H +DAW
Sbjct: 81 SSLQPPLHVATCAVCLRDFH--KSAQVRRAHRCRHVF-------HRACLDAW 123
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +2
Query: 479 NEKKEEETQDAMPDSTTSTEKNNANP--FHCGDDVLVANKDGRYYLGTIIELSTSND 643
N++ E + D E P F G +KDGR+Y G +I L S+D
Sbjct: 80 NQEPTSEAPEVAVDPPDDVEPEPLEPQEFSVGSKCRFRHKDGRWYNGCVIGLEGSSD 136
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 401 VSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDV 577
+ + + + E +L+K T C N+K+E+E D + +T EK++ N F D +
Sbjct: 508 IEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKI--NTLKDEKDH-NTFEHTDSI 563
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 500 TQDAMPDSTTSTEKNNANPFHCGDDVLVANKD 595
TQD M S T+ N N +HCG N+D
Sbjct: 738 TQDQMKSSMTAIHNENKNLYHCGIVYAHRNED 769
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +2
Query: 653 CEVGASVARCLVKFGDGTHSWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATTLS 832
C + C +SW+ ++ K +PP +D I + R+ T P TLS
Sbjct: 505 CYENPGITACQEMLERNKNSWSDLNISKSFHLPPLNDENIRKSIFGDRDSSGTIPGDTLS 564
Query: 833 S 835
+
Sbjct: 565 T 565
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 861 VAPATHVARDDSVVAGPVAGPSRRLHTTHMMR--PSSAG 751
VAPA +AR +V+AG R H H +R P S G
Sbjct: 408 VAPAAALARPGAVIAGSTPSAGSRHHRDHAIRREPPSPG 446
>08_02_0614 - 19333231-19334091
Length = 286
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +2
Query: 707 HSWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATTLSSRATCVAGATRQMSLAP 883
H + P LKL++ A GR +C CK G G A A C +LAP
Sbjct: 18 HPFHPAHKLKLITADDAGAGRFVCDGCKELGG--AGCARYECEEAGCDFDLHAPCALAP 74
>07_03_1792 +
29569623-29569737,29569848-29569981,29570117-29570284,
29572817-29573003,29573098-29573422,29573591-29574368,
29574897-29575022
Length = 610
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 461 PCASKKNEKKEEETQD 508
PC S KN KK++ET D
Sbjct: 187 PCTSNKNSKKQKETND 202
>02_02_0247 +
8261735-8261873,8261932-8261975,8262100-8262224,
8262331-8262391,8262434-8262442
Length = 125
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 386 DIKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKE 493
+ KA V K++ I L+ +D+ + K+N KKE
Sbjct: 87 EAKANVKKRIEYISAELKRMDRALKDLEEKQNSKKE 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,683,078
Number of Sequences: 37544
Number of extensions: 437567
Number of successful extensions: 1370
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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