Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B24
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.54 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 371 TILEMDIKAEVSKQLSLIDELLR-DLDKTITPCASKKNEKKEEETQDAMPDS 523
           TIL + +  E SK+L   DEL+R D    +  C+S+    +     D   DS
Sbjct: 382 TILTVQLIVEFSKRLPGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDS 433


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 816 GPVAGPSRRLHTTHMMRPSSAGGTLSSFSDDTGAHECV 703
           G   GPS R+H T+M + +S         D  G + CV
Sbjct: 649 GRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCV 686


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 764 GRIMCVVCKRREGPATGPATTLSSRATC 847
           G I+    KR  GP TG  T  +   TC
Sbjct: 386 GIILASPLKREGGPPTGATTGPNEIVTC 413


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 519 TQQLAPRKTMLTHSTAEMMYLW 584
           TQ+   +   L+H+T EM++ W
Sbjct: 174 TQECKLQMESLSHTTDEMIFQW 195


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 127 IFYKLYLQQNNSKEXLFWTFFLGSKSNXXL 38
           + YK+YL    S E      FL  K+N  L
Sbjct: 685 VLYKIYLNTMESHEVRCTAVFLLMKTNPPL 714


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 377 LEMDIKAEVSKQLSLIDELLRDLDKTITPCASK 475
           L M I   + +     +  L +  ++I PCASK
Sbjct: 53  LSMTIPPSIDRSSIHEESYLAESSRSIDPCASK 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,852
Number of Sequences: 438
Number of extensions: 5246
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)