Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B22
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    28   1.6  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   2.1  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   8.3  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 609 PTATKTRASMKAQPKPTLKH*PPLVKVNGVPTNQSSTPSLSLAPISS*DRSSP 767
           PT   T    +  P    +  P   K  G P+N    PSL   P  S  +S+P
Sbjct: 295 PTTHDTHPPKQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPATPNGSVPQSNP 347


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 425 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 553
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 689 QWGTDESIFNSILITRSYQQLRQIFAEYE 775
           QWGTD ++  ++  TR+ +Q++  F + E
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEE 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,986
Number of Sequences: 5004
Number of extensions: 53488
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)