Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B19
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    27   2.6  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.5  

>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA
          polymerase I and III subunit Rpc19 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 7  IPXTDHTIGNSLRFVI 54
          I   DHT+GNSLR+VI
Sbjct: 39 IQKEDHTLGNSLRYVI 54


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 347 MKLRNDNNGFIDLLPVTPVFAHQMNVENKPGYFSDIIIHRDKKAHNVNTLLDLRGCTFA- 523
           ++L N N+    L  +  + A  M+ EN   YF D++     +   +  L+ +    +A 
Sbjct: 39  LRLLNSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQYAE 98

Query: 524 YSDDESLSGSKIILKTLKEK 583
           ++ D +L     + KTL +K
Sbjct: 99  FNPDLALLSVNTVQKTLYDK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,236
Number of Sequences: 5004
Number of extensions: 71314
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)