Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B19
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    32   0.52 
08_02_1537 + 27686732-27687463                                         31   1.6  
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730     29   3.6  
08_02_1517 + 27642361-27643218                                         29   6.4  
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    29   6.4  
08_02_1528 + 27666356-27667081                                         28   8.4  

>02_05_1059 +
           33815979-33816235,33816467-33816732,33817149-33817192,
           33817363-33817539,33817638-33817964,33818067-33818192,
           33818518-33818622,33818815-33820125,33820221-33820382,
           33820416-33820517,33820549-33821272,33821358-33821451,
           33821824-33821986
          Length = 1285

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 434 PGYFSDIIIHRDKKAHNVNTLLDLRGCTFAYSDDESLS--GSKIILKTLKEKGENASFFG 607
           P Y+S+++IH   +A  VNT L +  C         L   G+   L ++ +       F 
Sbjct: 104 PFYWSNLLIHLKHEALQVNTSLKMPYCPIYVKQGAGLQNFGNTCYLNSVLQCLTYTEPFV 163

Query: 608 SLLRSGSHLASAQMV 652
           + L+SG H++S + +
Sbjct: 164 AYLQSGEHMSSCRTI 178


>08_02_1537 + 27686732-27687463
          Length = 243

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 518 FAYSDDESLSGSKIILKTLKEKGENASFFGSLLRSGSHLASAQMVLSKQAEWAAVDST 691
           F +   +S S  +   + +K   E      S+L S SHL S Q+ L   ++W+ V  T
Sbjct: 139 FKHISKKSSSADQESCRVIKLLAEAREIALSMLESSSHLLSKQIALPCSSKWSLVSKT 196


>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
          Length = 802

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 112 VSNFICNGTHETRNPTCYIYVSVPSGTIVRIDSGPARGNIGL 237
           ++ F  + T  +RNP  +  V+V   T+   D GP   N+G+
Sbjct: 30  INKFFKSNTSTSRNPDEWAIVAVEEQTMHPEDQGPIEDNVGI 71


>08_02_1517 + 27642361-27643218
          Length = 285

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 560 ILKTLKEKGENASFFGSLLRSGSHLASAQMVLSKQAEWAAVDST 691
           ++K L E  E A    S+L   SHL S Q V+   ++W+ V  T
Sbjct: 198 VVKLLAEARETAF---SMLEISSHLLSKQTVMPSYSKWSLVSKT 238


>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = -1

Query: 654 NTI*ADAKCDPDLNNDPKK------DAFSPFSFNV-----LRIILLPLRDSSSL*ANVHP 508
           N + AD     D NN P+       DAF PF+  V       + LL  RD+S    N H 
Sbjct: 522 NEMAADIIKQVDPNNFPQHYRLAQDDAFLPFAGVVGAIDGTHVPLLVRRDNSIPHRNRHN 581

Query: 507 RKSKSVLTLCAFLSR*MIMSEKYPG 433
             S++VLT+  +  R M +   +PG
Sbjct: 582 ETSRNVLTIIGWDERVMFVDVGWPG 606


>08_02_1528 + 27666356-27667081
          Length = 241

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 548 GSKIILKTLKEKGENASFFGSLLRSGSHLASAQMVLSKQAEWAAV 682
           GS++I K L E  E A    S+L S SHL S ++  S  ++W+ V
Sbjct: 151 GSRVI-KLLAEAREVAI---SMLESSSHLLSKKITTSNSSKWSLV 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,895,118
Number of Sequences: 37544
Number of extensions: 422167
Number of successful extensions: 872
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)