Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B18
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    28   2.1  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   2.8  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.8  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   2.8  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.8  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   6.5  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    26   8.6  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 323 LLFGIFSEENSLNPAKHFKIQSPKHSRYDRTAINAALSS 207
           LLFG+     S+N + + KI S   S   +T IN+A  S
Sbjct: 203 LLFGVKKFITSMNTSSNVKISSDPSSPSTQTTINSAAKS 241


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 384 VPRQFLELCFCTSLEVPVYRLALWYIF 304
           +PR  L + +C ++++ +Y L  WYI+
Sbjct: 33  IPRLSLTVKYCLAVKLLIYLLYCWYIY 59


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 384 VPRQFLELCFCTSLEVPVYRLALWYIF 304
           +PR  L + +C ++++ +Y L  WYI+
Sbjct: 33  IPRLSLTVKYCLAVKLLIYLLYCWYIY 59


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 384 VPRQFLELCFCTSLEVPVYRLALWYIF 304
           +PR  L + +C ++++ +Y L  WYI+
Sbjct: 33  IPRLSLTVKYCLAVKLLIYLLYCWYIY 59


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 384 VPRQFLELCFCTSLEVPVYRLALWYIF 304
           +PR  L + +C ++++ +Y L  WYI+
Sbjct: 33  IPRLSLTVKYCLAVKLLIYLLYCWYIY 59


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 286 FKEFSSENIPKSKPINWDFEAGAKTQLKELS 378
           F+   ++++  +  +NWDF+ G+KT+    S
Sbjct: 99  FEADVNKDLSSATDMNWDFDMGSKTESNRAS 129


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 326 GLLFGIFSEENSLNPAKHFKIQSPKHS 246
           G+L  IF+ +NSL P K  KIQS + S
Sbjct: 214 GILNTIFNSQNSLTPQK--KIQSSERS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,622
Number of Sequences: 5004
Number of extensions: 43192
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)