Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B17
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 84 3e-17
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 79 8e-16
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 32 0.095
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 31 0.17
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 2.0
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 6.2
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 8.2
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 8.2
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 26 8.2
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 26 8.2
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 83.8 bits (198), Expect = 3e-17
Identities = 36/105 (34%), Positives = 62/105 (59%)
Frame = +2
Query: 548 LEKEHEAITKVKYIDRIQIGKYEIDTWYFSPYPDEYGKQSKLWLCEYCLKYMRMEKTYRY 727
++ HE I +++ I++I IG +EI+ WYFSPYP E+ + +++C +C Y E+ ++
Sbjct: 172 VQNPHE-IARIRNINKICIGDHEIEPWYFSPYPKEFSEVDIVYICSFCFCYYGSERQFQR 230
Query: 728 HLSECTARQPQG*RNIQKRYNSYF*SRCXXX*IYCQNLCLLAKFF 862
H +CT + P G + Y S+F +C+N+CLL+K F
Sbjct: 231 HREKCTLQHPPGNEIYRDDYISFFEIDGRKQRTWCRNICLLSKLF 275
Score = 34.7 bits (76), Expect = 0.018
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 251 DESWHPAEIIQSRYSTAESCYEYYVHYVGYDRRLDEWVS 367
D + AEI+ + T Y YVHY Y++RLDEW++
Sbjct: 32 DGEYRKAEILMIQKRTRGVVY--YVHYNDYNKRLDEWIT 68
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 79.0 bits (186), Expect = 8e-16
Identities = 39/97 (40%), Positives = 51/97 (52%)
Frame = +2
Query: 572 TKVKYIDRIQIGKYEIDTWYFSPYPDEYGKQSKLWLCEYCLKYMRMEKTYRYHLSECTAR 751
T ++Y+ G Y I WY SPYP+EY L++CE CLKYM + + H +C+
Sbjct: 101 TSIRYL---YFGTYRIKPWYTSPYPEEYSCAKNLYICESCLKYMNSDHVLQRHKMKCSWS 157
Query: 752 QPQG*RNIQKRYNSYF*SRCXXX*IYCQNLCLLAKFF 862
P G + + S F IYCQNLCLLAK F
Sbjct: 158 YPPGDEIYRDKNISIFEVDGQRQPIYCQNLCLLAKMF 194
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 32.3 bits (70), Expect = 0.095
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +2
Query: 317 YYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDE 496
Y +HY G+ DEWV + R++ + + N K K + + KHD
Sbjct: 36 YLIHYKGWKNSWDEWVEQDRILQWTEENLKTQKELKNAAISTRQKPTSKKSASSTSKHDS 95
Query: 497 INHVQKTYAEMDPTTAALEKE-HEAITKVK 583
+ +T ++ + HE +++K
Sbjct: 96 TGVKTSGKRSRESSTVTVDGDSHELPSRIK 125
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 170 RSTDNEDSESVPEQPLDIGEHYLV------RRSDESWHPAEIIQSRYSTAESCYEYYVHY 331
+++ ++D S PL+ G Y+ + SDE + I+ SR S ++YY+ +
Sbjct: 140 KTSGSDDHNSQSPVPLNEGFEYIASSGSEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKW 199
Query: 332 VGYD 343
GYD
Sbjct: 200 EGYD 203
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +2
Query: 437 LLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGKYE 616
LL DK ++R+ + K EI H + E P + LE E K + D +QI +
Sbjct: 720 LLKDKY-TVVSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSR--DELQIQVEK 776
Query: 617 IDTWYFSPYPDEYG 658
++ FS + G
Sbjct: 777 VEEKIFSGFCKRIG 790
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 398 VCEQSNNNINCDHL--LTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAAL 550
V +Q+ + IN + LTD + + KR+ DE++ + ++ PT L
Sbjct: 262 VLQQALHEINIEFRSRLTDSERKALEEEDKREKDELDGYMRPVSQATPTNTDL 314
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 3 SXYRCXLIGNP*DFVDEAH----LRGICVIPLLLSALLWQK 113
S + L+ NP VD A +RG+CV PLLL + K
Sbjct: 512 SAVKAFLMNNPEGIVDLADKMTDMRGLCVNPLLLGNFVENK 552
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 465 IFRPDLSVSRWSQFMLLFDCSHTSNLSDITRWRDTHSSSLLSYPT 331
I R +++ + WS+ M CSH N + + + D+ + L + T
Sbjct: 389 IIRNEVAYAGWSEVMPFILCSHDENYAWLRKTDDSKAVQLANPKT 433
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 678 NHNF-DCLPYSSGYGLKYQVSIS 613
NHN + LP S GYGL+ + SI+
Sbjct: 236 NHNLIEALPLSYGYGLREKESIA 258
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 656 GKQSKLWLCEYCLKYMRMEKTYRYHL-SECTARQ 754
G Q W C C K MR E ++ H SE RQ
Sbjct: 20 GLQRLRWYCSACQKQMRDENGFKCHTQSEGHIRQ 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,687,133
Number of Sequences: 5004
Number of extensions: 79696
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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