Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B17
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 165 3e-41
02_05_0248 + 27145459-27145551,27145824-27145952,27146030-271466... 31 1.2
12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550... 30 2.8
03_02_0849 - 11768191-11771412 29 3.7
02_01_0758 + 5623953-5624171,5624251-5624430,5624533-5624591,562... 29 6.5
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78... 29 6.5
05_07_0225 + 28510996-28511080,28511184-28511437,28512964-285130... 28 8.6
04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585... 28 8.6
03_05_0071 - 20491521-20492813 28 8.6
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 165 bits (402), Expect = 3e-41
Identities = 88/221 (39%), Positives = 129/221 (58%), Gaps = 4/221 (1%)
Frame = +2
Query: 212 PLDIGEHYLVRRSDESWHPAEIIQSRYSTAESC---YEYYVHYVGYDRRLDEWVSRHRVM 382
PL++G + R D+ HP ++I+ R S+ S YEYYVHY ++RRLDEWV ++
Sbjct: 62 PLEVGTRVMCRWRDQKLHPVKVIERRKSSTSSSPADYEYYVHYTEFNRRLDEWVKLEQLD 121
Query: 383 SDRFDVCEQSNNNINCDHLLTDKS-GRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKE 559
+ + + D + DK+ K+TR+QKRK DE HV++ + E+D AA +E
Sbjct: 122 LETVET--------DVDEKVEDKATSLKMTRHQKRKIDE-THVEQGHEELD---AASLRE 169
Query: 560 HEAITKVKYIDRIQIGKYEIDTWYFSPYPDEYGKQSKLWLCEYCLKYMRMEKTYRYHLSE 739
HE TKVK I +I++G+YEIDTWYFSP+P EY KL+ CE+CL +M+ ++ + H+ +
Sbjct: 170 HEEFTKVKNIAKIELGRYEIDTWYFSPFPPEYNDSPKLFFCEFCLNFMKRKEQLQRHMKK 229
Query: 740 CTARQPQG*RNIQKRYNSYF*SRCXXX*IYCQNLCLLAKFF 862
C + P G + S F +Y QNLC LAK F
Sbjct: 230 CDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLF 270
>02_05_0248 +
27145459-27145551,27145824-27145952,27146030-27146695,
27147170-27147756,27147882-27148225,27148808-27148815
Length = 608
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 2/142 (1%)
Frame = +2
Query: 143 NNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAE-IIQSRYSTAESCYEY 319
N+++ +P + + + PL+ D+ PA + ++ E Y+
Sbjct: 49 NDDITSPVIEDDNTSTPKKISRIPLNCS--VFTPECDDKIRPAVGMTFEDIASVEKFYKS 106
Query: 320 YVHYVGYDRRLDEWVSRHRVMSDRFDVC-EQSNNNINCDHLLTDKSGRKITRNQKRKHDE 496
Y H VG+ R+ + V+ + VC Q ++N ++ +KI + R +
Sbjct: 107 YAHQVGFSVRIGQQKKLDGVVQCKHFVCSRQGWKHVNDKEIVDPSKKKKIKLKETRCGCD 166
Query: 497 INHVQKTYAEMDPTTAALEKEH 562
+ K ++ T A+L + H
Sbjct: 167 AHIYVKLCSDNKYTIASLVEHH 188
>12_01_0650 +
5500662-5501206,5502485-5502563,5503100-5503308,
5504396-5505146
Length = 527
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 218 DIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEYYV-HYVGYDRRLDEWVS 367
D+GE YL++ S +S+ ++ + E +EYYV H + YD L WVS
Sbjct: 398 DVGEEYLIQLSRKSFVDLKLRNFHFGRNEG-HEYYVMHDLIYD--LATWVS 445
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 580 NFSNSFMFLFKRGGRWI-HFGVSFLHMVYFVMFTFLIPCYFPAG--FVREQVVAVYVIVR 410
N SN L + R + +S+ H+ Y + F + C FP G F +++V+ +++
Sbjct: 397 NISNQMRILNEDNNRILPSLQISYHHLPYHLKQLFTLCCLFPVGHEFEKDEVIRLWIAEG 456
Query: 409 LL 404
L+
Sbjct: 457 LI 458
>02_01_0758 +
5623953-5624171,5624251-5624430,5624533-5624591,
5625243-5625390,5625476-5625547,5625636-5625746,
5626615-5626882,5627222-5627265,5627393-5627477,
5627554-5627600
Length = 410
Score = 28.7 bits (61), Expect = 6.5
Identities = 29/148 (19%), Positives = 61/148 (41%)
Frame = +2
Query: 113 GDKELEKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSRY 292
GD +++ + P + T EDS+ + +G++ V++ DES +P +SR
Sbjct: 126 GDSSVDRNKAEKQEPRSSTKETSLEDSKEKRKTQKPLGQNSSVKKDDES-NP----ESRK 180
Query: 293 STAESCYEYYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITR 472
+ Y + D R ++ + + ++ E +N+ T+++ K+ R
Sbjct: 181 AGGTPAYGFSFK---CDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLR 237
Query: 473 NQKRKHDEINHVQKTYAEMDPTTAALEK 556
K + + + Y E P L+K
Sbjct: 238 --KSLNFKATPMPSFYQEPTPPKVELKK 263
>02_01_0107 +
785993-786359,786773-787703,787807-787975,788472-788588,
788815-788961
Length = 576
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 131 KPIVNNELPNPECRS-TDNEDSESVPEQPLDIGEHYLVRRSDESWHPA 271
K + N+E+PN E S +D + E D+G + ++E W PA
Sbjct: 214 KDLENHEIPNSETNSISDKQGDEEHQPAKKDVGIAWEDDENNEGWLPA 261
>05_07_0225 +
28510996-28511080,28511184-28511437,28512964-28513085,
28513399-28513474,28513507-28513616,28513647-28513920
Length = 306
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 458 RKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGKYEIDTWY 631
R+++R Q ++ DE V T + EH K + DR+ + ++D W+
Sbjct: 91 RRLSRVQSKQLDEFYRVNHTVDSTSHLRSRKLMEHFQKQKKELADRLNLRISQVDAWF 148
>04_01_0451 +
5845249-5846133,5846220-5846509,5855590-5856060,
5856898-5857063,5857100-5857498,5858031-5858075
Length = 751
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/73 (20%), Positives = 32/73 (43%)
Frame = +2
Query: 155 PNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEYYVHYV 334
P P+ R++ +E+ G+ + VR+++ EII ++ + Y H+
Sbjct: 383 PRPKIRTSSSEEEGYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSSEGYRELKHFE 442
Query: 335 GYDRRLDEWVSRH 373
+R+ + W H
Sbjct: 443 RIERKREPWALTH 455
>03_05_0071 - 20491521-20492813
Length = 430
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 656 GKQSKLWLCEYCLKYMRMEKTYRYH-LSECTARQPQ 760
G Q W C+ C K R E ++ H +SE RQ Q
Sbjct: 20 GLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQ 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,808,208
Number of Sequences: 37544
Number of extensions: 473669
Number of successful extensions: 1356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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