Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B16
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0119 - 13645068-13645436                                         29   6.6  
03_06_0067 + 31430669-31430852,31430954-31431099,31431227-314316...    29   6.6  
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067...    28   8.7  
05_05_0180 - 23027979-23028092,23028180-23028255,23028342-230284...    28   8.7  
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656...    28   8.7  
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    28   8.7  

>11_04_0119 - 13645068-13645436
          Length = 122

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 237 PVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSIRWSVLPXFVA 362
           P P  GTS+YS+V P  T C  +  N S  +I+  V P  +A
Sbjct: 44  PAPCIGTSNYSVVTP--TRCSTVVINISDIAIQVLVAPLIIA 83


>03_06_0067 +
           31430669-31430852,31430954-31431099,31431227-31431614,
           31431707-31431783,31431922-31432146
          Length = 339

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 504 NYVHKIELHNQKRISNAAYKYNAVLLGLLWSA 599
           +++ K  LHN+K    A+  ++ VL+G LW++
Sbjct: 262 SHLQKYRLHNRKSPGTASASHSIVLVGDLWAS 293


>06_03_0824 +
           25105450-25105482,25105649-25106485,25106580-25106738,
           25106830-25106886,25106971-25107202,25107338-25107638,
           25107703-25107976,25108051-25108152,25108244-25108525
          Length = 758

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 339 SVLPXFVASGAIIIDR--FQHYGKSEIKDKNLAKASFGHH 452
           S++  F+    I+ +R  F  YGK ++++K+  K + GHH
Sbjct: 318 SMIAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHH 357


>05_05_0180 -
           23027979-23028092,23028180-23028255,23028342-23028433,
           23028689-23028790,23028865-23029138,23029203-23029503,
           23029639-23029870,23029955-23030011,23030103-23030261,
           23030356-23031192,23031383-23031437,23032103-23032158
          Length = 784

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 339 SVLPXFVASGAIIIDR--FQHYGKSEIKDKNLAKASFGHH 452
           S++  F+    I+ +R  F  YGK ++++K+  K + GHH
Sbjct: 344 SMIAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHH 383


>03_02_0225 +
           6565337-6565369,6565564-6565734,6566113-6566400,
           6566495-6566653,6566745-6566801,6566886-6567117,
           6567253-6567553,6567618-6567891,6567966-6568067,
           6568159-6568440
          Length = 632

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 339 SVLPXFVASGAIIIDR--FQHYGKSEIKDKNLAKASFGHH 452
           S++  F+    I+ +R  F  YGK ++++K+  K + GHH
Sbjct: 192 SMIAEFIERDVILKNRNPFPAYGKMKLRNKHDEKYNLGHH 231


>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 265 IRWCGRGLHNADSFTQTDRHLLFAGRCCLXSSLAVP 372
           +R C R   NA      + H +F GRC + +  +VP
Sbjct: 198 MRKCARSFRNAPLRFIAEHHAVFRGRCVVGNRSSVP 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,207,228
Number of Sequences: 37544
Number of extensions: 457463
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)