Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B16
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10414-10|AAA19077.1| 176|Caenorhabditis elegans Hypothetical p... 29 3.4
Z82287-3|CAB05313.3| 772|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical pr... 29 4.5
U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein. 29 4.5
AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical ... 29 4.5
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 28 7.8
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 28 7.8
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 28 7.8
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 28 7.8
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 28 7.8
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 28 7.8
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 28 7.8
>U10414-10|AAA19077.1| 176|Caenorhabditis elegans Hypothetical
protein F42A10.6 protein.
Length = 176
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 156 WSWHLRVRAWLSTTTVTM*MRISACSSPVP 245
WSW++ W S T + I AC++ VP
Sbjct: 88 WSWNMATCGWSSVPTFGLLNNIDACTNGVP 117
>Z82287-3|CAB05313.3| 772|Caenorhabditis elegans Hypothetical
protein ZK550.3 protein.
Length = 772
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 268 EYDEVPDKGTGDEHADIRIYIV 203
E+ ++ DKG HAD+RIY V
Sbjct: 451 EFKDITDKGLEKAHADVRIYSV 472
>Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 286 LHNADSFTQTDRHLLFAGRC 345
L N +SFT T++HL+FA C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419
>U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein.
Length = 550
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 286 LHNADSFTQTDRHLLFAGRC 345
L N +SFT T++HL+FA C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419
>AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 286 LHNADSFTQTDRHLLFAGRC 345
L N +SFT T++HL+FA C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 179 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 230
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 179 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 230
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 179 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 230
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 179 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 230
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 268 EYDEVPDKGTGDEHADIR 215
+YD+ PD GTGD +IR
Sbjct: 1017 DYDDDPDSGTGDSDGEIR 1034
>Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical
protein ZK632.11 protein.
Length = 453
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 410 LALTIMLESVNNNGTASDEXRQHRPANRR 324
L T + S NN+GTA ++ Q+R NRR
Sbjct: 422 LVSTNEISSSNNSGTAKNKNNQNRKRNRR 450
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 56 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 107
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 179 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 230
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 179 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 230
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 500 PPRCVRTASTSKIAPLMMAKRGLSQVLVFDLALTIMLESVNNNGTASDEXRQHR 339
PPR +R T+ P + RGL + D + I S +++ T+ ++ QHR
Sbjct: 179 PPRPLRLPQTAAKGPAPLPPRGLPRTYPLDFPVDIPTTSSSSSNTSYND--QHR 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,582,539
Number of Sequences: 27780
Number of extensions: 414397
Number of successful extensions: 954
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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