Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B14
(920 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.16
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.16
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.16
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.66
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.5
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 8.2
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 28 8.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +3
Query: 744 PPPPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP PP PP G + P PPP PP P P
Sbjct: 726 PPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPP---PPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +3
Query: 744 PPPPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP PP PP G + P PPP PP P P
Sbjct: 726 PPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPP---PPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +3
Query: 744 PPPPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP PP PP G + P PPP PP P P
Sbjct: 309 PPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPP---PPPPPPGGCPPP 354
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.66
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = +3
Query: 744 PPPPLXXPPXKS--PPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP+ PP PP I PP P PPP PP P P
Sbjct: 33 PPPPMCAPPPLPCPPPPICPPQFCPPP-------PMCPPPPPPPPPPMCPPPP 78
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +3
Query: 744 PPPPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP SPP PP P PP PP+ P P
Sbjct: 237 PPPP--PPPKGSPPLAGSGSPPPPPA---AGSPPPPRTGSPPPPPTGSPPP 282
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +3
Query: 744 PPPPLXXPPXK---SPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP SPP PP P +PPP P P P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRT--GSPPPPPTGSPPPPPAGGSPPP 291
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +3
Query: 744 PPPPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP SPP PP P PP PP+ P P
Sbjct: 258 PPPP--PPPKGSPPLAGSGSPPPPPA---AGSPPPPRTGSPPPPPTGSPPP 303
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +3
Query: 744 PPPPLXXPPXK---SPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP SPP PP P +PPP P P P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRT--GSPPPPPTGSPPPPPAGGSPPP 312
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +3
Query: 744 PPPPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP SPP PP P PP PP+ P P
Sbjct: 243 PPPP--PPPKGSPPLAGSGSPPPPPA---AGSPPPPRTGSPPPPPTGSPPP 288
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Frame = +3
Query: 744 PPPPLXXPPXK---SPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
PPPP PP SPP PP P +PPP P P P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRT--GSPPPPPTGSPPPPPAGGSPPP 297
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +3
Query: 744 PPPPLXXP---PXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPP 878
PPPP P P P + + PP I P PPP PP
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPP 521
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +3
Query: 741 RPPPPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPSVXPXP 896
R PPP PP + P PP NPP PPS P P
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPP-----RTPPSPEPRNPPRTPPSPIPPP 194
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +3
Query: 750 PPLXXPPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPPS 881
PPL P +PP + I + P PPP PP+
Sbjct: 557 PPLPPLPPPAPPIVVHVLNYTRDHDHIVFVPLLPYIPPPPPPPA 600
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = +3
Query: 765 PPXKSPPXIXRXXXXPPXGXIIXYXXXXPXXNPPPXPP 878
PP +PP + PP ++ PPP PP
Sbjct: 530 PPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPP 567
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,617,057
Number of Sequences: 27780
Number of extensions: 223184
Number of successful extensions: 1178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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