Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B13
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.53
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.1
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.8
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 3.7
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.9
07_03_1136 + 24218601-24218734,24218769-24219906 28 8.6
06_03_1326 - 29355467-29355817 28 8.6
05_05_0135 - 22626163-22626198,22626391-22626441,22626516-226266... 28 8.6
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 8.6
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.53
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 550 PXGXGXWXLGPXPVXPPXNPXPPAFXXGEXVXPPPRGEXGFPXKXGG 690
P G G P P P P PP G PPP G G P GG
Sbjct: 1189 PRGHGGVGGPPTPPGAPAPPMPPGVPGG---PPPPPGGRGLPAPPGG 1232
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = -2
Query: 716 GXXXFSXGXPPXXXGNPXSPLGGGXTXSPXXKAGGXGXXGG-XTGXGPKXQXPXP 555
G ++ PP G S GGG P GG G GG G G P P
Sbjct: 86 GTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTP 140
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +3
Query: 546 PPPGXXGLXFGAXSRXPPXXPLAPXXXXXXXXXXPPKGGXXVSXXXRGXTPGKTXXXKGP 725
P P G GA + PP P P P S P + P
Sbjct: 305 PHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPP 364
Query: 726 XKGXNPXKGPGWXGFFXXGPAP 791
G P PG G GP P
Sbjct: 365 GPGPGPPPPPGAAGRGGGGPPP 386
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 580 PXPVXPPXNPXPPAFXXGEXVXPPPRGEXGFP 675
P P P P PP G+ PPP+G+ +P
Sbjct: 276 PYPPQPQGQPYPPQ-PYGQTYPPPPKGQPTYP 306
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = +1
Query: 577 GPXP-VXPPXNPXPPAFXXGEXVXPPPRGEXGFPXKXGGXPXEKXXXPKGXXRAXTXKKG 753
GP P P P PP G PP G P K G P K P + K G
Sbjct: 156 GPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPG 215
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +1
Query: 580 PXPVXP-PXNPXPPAFXXGEXVXPPPRGEXGFPXKXGGXP 696
P P P P P PP G PPP+G P G P
Sbjct: 357 PPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +1
Query: 586 PVXPPXNPXPPAFXXGEXVXPPPRGEXGFP-----XKXGGXP 696
P PP P PP G PPP+G P K GG P
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = -2
Query: 695 GXPPXXXGNPXSPLGGGXTXSP-XXKAGGXGXXGGXTGXGPKXQXPXPXG 549
G PP G P PLGGG P GG G G + P P G
Sbjct: 89 GLPPGGGGAP-GPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGG 137
>06_03_1326 - 29355467-29355817
Length = 116
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -2
Query: 653 GGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPXXP 507
GGG + GG G GG G G P G +SR P
Sbjct: 56 GGGYSGGHAGGGGGAGKSGGYHGGGGGDSMKAPGGDGSYISRSGFESNP 104
>05_05_0135 -
22626163-22626198,22626391-22626441,22626516-22626608,
22627249-22627254,22628051-22628180,22628333-22628583
Length = 188
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 668 PXSPLGGGXTX-SPXXKAGGXGXXGGXTGXGPKXQ 567
P SP GGG + S + GG G GG G G + Q
Sbjct: 5 PGSPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQ 39
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 580 PXPVXPPXNPXPPAFXXGEXVXPPP 654
P P PP N PP F + PPP
Sbjct: 964 PPPPPPPPNVAPPPFTRQDIPPPPP 988
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,002
Number of Sequences: 37544
Number of extensions: 234015
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -